Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral2072g00004 ATGGGAGAAGGCGCAGAGTTTCACGACTTTTGTGGATCGCCGGATAAACGGAGCATCGCAGAGAGAAGGGGCTTCGGCTCCGGTGCCGCCAGAATCAATACGCCCTGCTTTCGCACCACTAGCCCACTTGCTTCGCCGGCAGTTCTTTCCCCCCGTGTCACTATACCCCCCGGTATTAGTCCCACGGCCTTGCTTGACTCTCCCATCATGCTTCCTAATTCTCAGGCAATGCCATCTCCCACCACCGGAAATTTTCTGCTGCCTCCTCTCACTCAGCAGGGATCACTTTTCACTTCCGCCCCTCTCGATGCTGGCCCTGGCTTCGCTTCCTCTGCCAATGTCAAGCCTCAAATCAATGCCAACCCTTTTCCTGCCTCCTCTGTTTCCGAAATTCAGGTCTCTAACCATTGCATTATGGCAAAGGGAGGAATTTCAGATTGCCAGCCAATTGTGCCTGATACAACACTGGATTTTTCAATTCCAGCAGAGTTTCCGAAAGGACATAAAGTGAAAAGTGACGTACATTCTTATGATGATGTGAAAATTATACAAGATGCAGCTTATGACGCTAACAATCTTGAGATGCAAATGCGTCGTTCTGAGGAAGTTGCTGACAAAAGCTTTCTACCTAGAAAAGCTAACAAGGATGTTGGACAGGATAATCTTACAGAAGACAAGAGAGATGCATCCTATTTGGTGGGAATGGTAAGGACCTCAGAGGATGGATACAATTGGAGAAAATATGGACAGAAGCAGGTTAAAGGTAGTGAATATCCTAGGAGCTATTATAAATGTACCCATCCTAACTGTCAGGTCAAGAAAAAGGTGGAACGATCTCTTGATGGCCAAATAACTGAGATTATCTACAAGGGTACTCATAATCATGGGAAACCTCAACCTAGTCGCCGACCATCACTGGGCACAGCACTTTCTACTGATGAGGTGTTAGACGGGGAAGGTGGCCGAAACTTTGTTAAAGCTGACGGTGGTTGGAGGAACATTCACTCAGGGATGAAGGATATAAAACAAAATTTGGATTGGAAGGCTGATAATCAGGAAAGGACATCATCAACTTCTGTTGTAACCGAACTCTCAGATCTCGTATCAACTAACAAGGGTAAACCTATCAACATGTTTGAGTCAGAGGACACTCCAGAGCTTTCTTCTACACTTGCTAGTCAAGATGATGATGAAGAAGGAGCAACTCAAGGAAGCATATCACTTGAAGAGGATGCAGATGATGAAGAACCTGAGTCAAAAAGTAGGAAGAAAGAGAGCTGCTTGATTGAATCAAATTTTGCTTCTAGGGCTGTCCGTGAGCCAAGGGTAGTTGTCCAAATTGAGAGTGAGGTGGACATACTTGATGATGGTTATCGCTGGCGAAAGTATGGACAGAAAGTTGTCAAAGGAAATCCAAACCCTAGGAGCTACTACAAATGCACAAGTGCTGGGTGTCTTGTGAGGAAACATGTGGAAAGGGCTTCACACGATCTCAAATTTGTAATAACTGCTTATGAGGGTAAACACAACCATGAAGTGCCCACCGCCAGAAGCAGCAATCAAATGAGCTCGAGTGGTGCCTGTATGCTTTCAAGTGCAGCCACTACACAAGCGGCTCTTGCACCACCTGGGAGTGTCAGTATTCGAAAGCCGGAAAATCAAGTTCAAAACACTGCATCTCATTTTGATAGGAAGCCCGGTTTTATTGGAGGTTTCGGCGATGCGATGAAATTCGGGTCTTCCTCCTTATGTCAGATGAAGTATACTCCCTTGAGCAATACCTTGACTTACGGCTCTTGTGCTACTGCTCAACCCTGTTCTATGACCTCTGTGTTCCCTGACTTTCCAGTGTCACTACCGTTGAACCTTCCCTCATCTGGAGGTTTTCCTCCGGCTGGACTCAATCTCAATTGTGCAAGACCTGTGTCTTTTCTTTCAGGGCAGCTGCTTAAGGAGGTCGATACAGGTTTCCTGAGGCCTAAACAGGAGCATGAAGATGCTATTATCTATGATGCCTGCATGCCCATCGCTGATCATGCCACTGCTTCCCTCACTCCATCGTCGACATCCACTTCGGTGTATAATCGGGTCGTGCACGGTTTCCCTCCATAA 2112 0.465 MGEGAEFHDFCGSPDKRSIAERRGFGSGAARINTPCFRTTSPLASPAVLSPRVTIPPGISPTALLDSPIMLPNSQAMPSPTTGNFLLPPLTQQGSLFTSAPLDAGPGFASSANVKPQINANPFPASSVSEIQVSNHCIMAKGGISDCQPIVPDTTLDFSIPAEFPKGHKVKSDVHSYDDVKIIQDAAYDANNLEMQMRRSEEVADKSFLPRKANKDVGQDNLTEDKRDASYLVGMVRTSEDGYNWRKYGQKQVKGSEYPRSYYKCTHPNCQVKKKVERSLDGQITEIIYKGTHNHGKPQPSRRPSLGTALSTDEVLDGEGGRNFVKADGGWRNIHSGMKDIKQNLDWKADNQERTSSTSVVTELSDLVSTNKGKPINMFESEDTPELSSTLASQDDDEEGATQGSISLEEDADDEEPESKSRKKESCLIESNFASRAVREPRVVVQIESEVDILDDGYRWRKYGQKVVKGNPNPRSYYKCTSAGCLVRKHVERASHDLKFVITAYEGKHNHEVPTARSSNQMSSSGACMLSSAATTQAALAPPGSVSIRKPENQVQNTASHFDRKPGFIGGFGDAMKFGSSSLCQMKYTPLSNTLTYGSCATAQPCSMTSVFPDFPVSLPLNLPSSGGFPPAGLNLNCARPVSFLSGQLLKEVDTGFLRPKQEHEDAIIYDACMPIADHATASLTPSSTSTSVYNRVVHGFPP 703
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral2072g00004 703 SUPERFAMILY WRKY DNA-binding domain 447 514 IPR036576 GO:0003700|GO:0006355|GO:0043565
Pral2072g00004 703 Gene3D WRKY domain 441 507 IPR036576 GO:0003700|GO:0006355|GO:0043565
Pral2072g00004 703 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 192 538 IPR044810 GO:0003700
Pral2072g00004 703 SMART WRKY_cls 239 297 IPR003657 GO:0003700|GO:0006355|GO:0043565
Pral2072g00004 703 SMART WRKY_cls 454 513 IPR003657 GO:0003700|GO:0006355|GO:0043565
Pral2072g00004 703 FunFam WRKY transcription factor 227 299 - -
Pral2072g00004 703 FunFam WRKY transcription factor 33 441 507 - -
Pral2072g00004 703 Gene3D WRKY domain 232 299 IPR036576 GO:0003700|GO:0006355|GO:0043565
Pral2072g00004 703 Pfam WRKY DNA -binding domain 455 512 IPR003657 GO:0003700|GO:0006355|GO:0043565
Pral2072g00004 703 Pfam WRKY DNA -binding domain 240 295 IPR003657 GO:0003700|GO:0006355|GO:0043565
Pral2072g00004 703 MobiDBLite consensus disorder prediction 371 426 - -
Pral2072g00004 703 ProSiteProfiles WRKY domain profile. 449 514 IPR003657 GO:0003700|GO:0006355|GO:0043565
Pral2072g00004 703 MobiDBLite consensus disorder prediction 371 401 - -
Pral2072g00004 703 SUPERFAMILY WRKY DNA-binding domain 237 298 IPR036576 GO:0003700|GO:0006355|GO:0043565
Pral2072g00004 703 ProSiteProfiles WRKY domain profile. 234 298 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral2072g00004 Pral-Chr2072 18964 22752 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral2072g00004 453 557 WRKY Transcription Factor Family AT4G26640 40.187 7.92e-15 75.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Pral2072g00004 WRKY 6e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral2072g00004 K18835 - qsa:O6P43_007761 788.104