Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral2065g00003 ATGGAAAGCAAAGGACTGGCACTGAAGCCACAGCCCAAGAAGAATCTATGGAAGCCAGAGGAAGACTTGGTTCTGAAAACCTACATTGAAGCTCACGGTGAAGGAAACTGGGAAGCCGTTTCCAAAAAATCAGGTCTGAAGAGAGGAGGGAAGAGTTGCAGGCTAAGATGGAAGAACTATTTGAGACCTGACATTAAACGCGGAGGAATGTCTGAAGAAGAAGAAGACCTTATCATCAGATTGCATAAGCTTCTTGGCAACCGATGGTCACTGATAGCTGGAAGAATTCCTGGCAGAACCGATAATGAAGTGAAGAACTACTGGAATACCCGTTTGGACAAGAGATGCCCTCGAGGCAAAAGAAAAGCCATCGGTTCAAGCAAGGATCAGCAAGAAACCAGCAAGAAATCACGAATCAGCAACTCCGACATTCCGATTCCCGCAAGCAACGCAGAGACAGGGTTGCTGGATGCGAGGAAAGATGAGAACAATAACATCACACACTCGTGGGTCGACGAAACGCAGAGCTTCTACTGTGACCTAGATTTTCCGATTGTGCCTGGGAACAGTGCGGTATTTGGTTTCGACGATGAGCATTTCATGACCAATTTGGATTCCATTCTCATGCTTGAAACTGAAGCTGTAGACTATGGATGGTGGGAGTCCAGTTCACGCACGGAATGCTTCATGCCATAG 696 0.4684 MESKGLALKPQPKKNLWKPEEDLVLKTYIEAHGEGNWEAVSKKSGLKRGGKSCRLRWKNYLRPDIKRGGMSEEEEDLIIRLHKLLGNRWSLIAGRIPGRTDNEVKNYWNTRLDKRCPRGKRKAIGSSKDQQETSKKSRISNSDIPIPASNAETGLLDARKDENNNITHSWVDETQSFYCDLDFPIVPGNSAVFGFDDEHFMTNLDSILMLETEAVDYGWWESSSRTECFMP 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral2065g00003 231 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Pral2065g00003 231 Pfam Myb-like DNA-binding domain 67 110 IPR001005 -
Pral2065g00003 231 Pfam Myb-like DNA-binding domain 15 61 IPR001005 -
Pral2065g00003 231 SUPERFAMILY Homeodomain-like 13 108 IPR009057 -
Pral2065g00003 231 CDD SANT 70 112 IPR001005 -
Pral2065g00003 231 CDD SANT 17 61 IPR001005 -
Pral2065g00003 231 SMART sant 66 114 IPR001005 -
Pral2065g00003 231 SMART sant 13 63 IPR001005 -
Pral2065g00003 231 MobiDBLite consensus disorder prediction 118 148 - -
Pral2065g00003 231 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 11 158 - -
Pral2065g00003 231 Gene3D - 14 66 - -
Pral2065g00003 231 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Pral2065g00003 231 FunFam Transcription factor TT2 70 141 - -
Pral2065g00003 231 Gene3D - 70 143 - -
Pral2065g00003 231 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Pral2065g00003 231 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Pral2065g00003 231 FunFam MYB-related transcription factor 13 66 - -
Pral2065g00003 231 MobiDBLite consensus disorder prediction 118 136 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral2065g00003 Pral-Chr2065 33083 34356 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral2065g00003 1 193 MYB Transcription Factor Family AT5G52600 51.000 1.03e-61 190
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pral2065g00003 Myb_DNA-binding 1.2e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral2065g00003 K09422 - qsa:O6P43_002410 272.707