Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral2065g00002 ATGGACCTTCAACTAGGCCTCTCTCTCTCCACCACCTTTGATTCCGATCATGATCTTTTCACTTCATTCTCAGTGTCTCATAAGAAACGCAGTTTCAGTGATCTCCTTCACCATGACTGTCTCAGAGACAGAGACGGCGACGGCGGCGGCGGCGACGTTTTGCTTCCCACTCTGCCTCTCCTTCCCTTAACACCTTCCCACCAAGCTGACCTTGACGACGAAGACCTCCGTAACAGCTGCTCCATCGTCACCAAACATGATGGGGATGATGGTGGAGAATCTTCTGCAGCAGTCGGGTGGCCGCCATTGATGTCGCAGAGGAAGAAGGTTCGGGTTGAAGAAGATGGCATGGCGGAAATTCGTCAATACGTTAAAGTGAAGATGGAGGGAGAAGGAATTGGACGAAAGGTTGATCTTAGCCTGCATCAATCTTTTCAGAAACTGAAGGAAACCTTGATGGCCATGTTTGGAAAATGTCATCAAAATTCAGAGTGCTATGAGTTAGCTTATCAGGACAAAGAAGGTGACTGGTTGCTGGCCGAGGATCTGCCATGGAAAGACTTCCTCCAGTGTGCTCAGCGCCTCACATTGCTCAAGAGAACAAGTTAA 609 0.491 MDLQLGLSLSTTFDSDHDLFTSFSVSHKKRSFSDLLHHDCLRDRDGDGGGGDVLLPTLPLLPLTPSHQADLDDEDLRNSCSIVTKHDGDDGGESSAAVGWPPLMSQRKKVRVEEDGMAEIRQYVKVKMEGEGIGRKVDLSLHQSFQKLKETLMAMFGKCHQNSECYELAYQDKEGDWLLAEDLPWKDFLQCAQRLTLLKRTS 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral2065g00002 202 Pfam AUX/IAA family 164 200 IPR033389 -
Pral2065g00002 202 Pfam AUX/IAA family 26 159 IPR033389 -
Pral2065g00002 202 Gene3D - 116 202 - -
Pral2065g00002 202 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 2 201 IPR003311 GO:0005634|GO:0006355
Pral2065g00002 202 ProSiteProfiles PB1 domain profile. 121 202 IPR000270 GO:0005515
Pral2065g00002 202 SUPERFAMILY CAD & PB1 domains 119 196 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral2065g00002 Pral-Chr2065 24435 25871 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral2065g00002 120 201 B3 DNA Binding Superfamily AT1G19850 33.721 1.63e-10 57.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Pral2065g00002 AUX_IAA 9.4e-15 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral2065g00002 K14484 - gmx:100808466 161.384