Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral2063g00006 ATGAGCAGCTCAGGACCTCGGGAAGGCCAAGAGGCTGCTAGAGATTTTCAAAATCAGCAAATCGTGGTTTTTGACTTGGACCTCAACCTTCCTCTTCTTGAGGAGAGCCTGGATGCAGCAGCTCAAGGATCAGCCCTTGGTAATGAAAATTTGCAGTTGCAGATAGGTGATGCTGAACTTGATGATGTTGTTATAATATCCCCAAGAAAATTTGAAGAAGCCAAGAGCAATTCTCGAAGAAAAAATGCTTGTCAAAGTTATGCGGTTATACAAGTGTTTGATGAATATAGAGGAAACATTTCAGAAGTGACAGCTGATGCGGTTTGTCACTCTATTAGTGACAACAGACACGAAAATCCACAAAACCAAGCAGTTGTGGACTGTGAGCTGCACCTAGGTGTGAAAGACAGTAGGGTAGCCAAGGTGCTGTCTCCGCGTGAGGTGCTGCCCGAGGAACCCACCTTCAGCTGCACAATTTGCATGGGCCAGCTGATTGAAGAGACATCAACTAAGTGTGGCCACATTTTCTGCAAGAAGTGCATTCAGGCAGCCATAGCTGCTCAACACAAATGTCCCACCTGCAGGCGTAAACTCAGAAAGTCTGACATGTTTAGGGTTTACCTTCCAACAGCTAACTAG 639 0.457 MSSSGPREGQEAARDFQNQQIVVFDLDLNLPLLEESLDAAAQGSALGNENLQLQIGDAELDDVVIISPRKFEEAKSNSRRKNACQSYAVIQVFDEYRGNISEVTADAVCHSISDNRHENPQNQAVVDCELHLGVKDSRVAKVLSPREVLPEEPTFSCTICMGQLIEETSTKCGHIFCKKCIQAAIAAQHKCPTCRRKLRKSDMFRVYLPTAN 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral2063g00006 212 Pfam Zinc finger, C3HC4 type (RING finger) 157 194 - -
Pral2063g00006 212 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 144 209 IPR013083 -
Pral2063g00006 212 SUPERFAMILY RING/U-box 147 200 - -
Pral2063g00006 212 ProSitePatterns Zinc finger RING-type signature. 172 181 IPR017907 -
Pral2063g00006 212 ProSiteProfiles Zinc finger RING-type profile. 157 195 IPR001841 -
Pral2063g00006 212 PANTHER ELFLESS, ISOFORM B 1 211 - -
Pral2063g00006 212 SMART ring_2 157 194 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral2063g00006 Pral-Chr2063 23763 27335 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral2063g00006 57 211 C3H Transcription Factor Family AT5G48655 42.500 3.28e-27 101
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral2063g00006 K22651 - cave:132178604 155.221