Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral2056g00003 ATGGCGCGTGATGTCGATGGAGTTGGGTGTTCTTCAAGCTCTTCTGCCTCAACTAAGAGATGGAAGTATGATGTGTTTTTGAGCTTTCGAGGGGAAGATACTCGGAAAAATTTTACTGATCATTTGTATGTTGCTTTAAAACGCAAAGGATTGAGAACTTTTCGGGATGAGGAAGAACTTGAAAGGGGAGAATATATTAATCCAGGTTTAGTACAAGCAATTGATGAATCTCGTTCTGCAATTGTGGTGCTCTCCCCAAATTATGCTTCTTCAACTTGGTGTTTGGATGAGCTTCAAAAGATCCTGCAGTTAAAAGAAGAGTCGAGTCTTCAAGTATTTCCAATATTTTACCGTGTAGATCCCTCTAGTGTTAGGAAACAAAAGGGATGTTTTGCAGAGGCATTCATAAAGCATGAAGAAAGATTTGTACAAGACAAAATGAAAGTGCGAAAATCGAGGGATGCTTTAGAAAAAATTGCTACTATATGTGGTTGGCACTTACAAAATTGGCATGAAATGGAATTCACTGAAAGCATTGCTGAAGAAATCATGTCAAAGTTACTTGATGACGAATTGCCATCTGACCTTGGTATGTTAATTGGAATTCAACCAAAATTAGATGAATTAGAGTCAATCGTCACAATGGAATTGGGAGGAGTTGGGTTTATAGGAATATGGGGTATAGGAGACATAGGCAAAACAACTCTTGCTAGAGCTTTTTATGAGCGAAAGCTCAAAAACTTTGAGATTCACTGCTTTCTTCATAATATTAGAGAGGCATATGAAAAAGAAGGAGATAAACCTAATGAAGATTATTTGAACCTTGCTAGAACCGTCATTGAATATGCTAGAGGCCTTCCTTTAGCACTCAAAGTGTTAGGTTCATTTCTTTGCAAAAGAACTATAGTGCAATGGAAGCATGCACCAGCTAAGTTCAAGAAAGTTCCTCCAAATGACATTTTAAAGATACTTCAAGTAAGTTTTGATGGATTAGACATTACACAAAAGACTATATTCTTGGATATTGCTTGCTTTTTCAATGGAATGGTCCAAGATCATGTCATACAAATTTTAGAAATTTTGGACAATGATCTTCACCCAAAAATTGGAATAAATGTTCTTATTGAGCAATCCTTAGTAATTAATTATGAAGGGCATTTGTGGGTGCGTGAAATTCTTCAAAATATGGGTAAATATATTGTCTACGAAAAATCACCTGATGATGCCGGCAAGCGCTCTAGGTTACTGTCCTTGGAGGATGCCAAGCATGGGACAGAAGCTATTCGGGGAATAATTCTCACATTAGAAAAGTCATGTGATACATTTTGGGATCCTGAAGCCTTCTCAAAAATGAGTAATCTCAAGTTACTTATCATTTCAAATTGCTCACATGTTTTACGTTTTCAATTGAATCTTCCTTATGGACTCAAGGCCCTTTCCAAAGAGTTGAAAAGTGATAATATGGGAGGGTCTCTCCAAAGCCTCAAGTCCATTGATCTTTCTTATTCAGAGTACCTCAGCAAAACTCCAAATTTTGATGGAATTCCTCATCTTGAAAAATTGATTCTTGAAGGGTGTTCTAACTTGATTGAAATTCACCGATCCCTTGGACAACACAAAAAACTCGTCATTGTTAACTTGAAAGATTGCAGAGAAGTTAAAAACCTTCCAAGGAAATTTGAGATGAATTGCTTAGAGACTTTTGTTCTATCTGGTTGTTCAAGAGTTATAAAACTTCCTGAGTTTGGAAAAGATATGGAACGTCTGTCTAAACTTGATTTAGAGGGGACTGCTATAACAAAATGTCTCAATCACTGGGCAATTTGA 1827 0.3667 MARDVDGVGCSSSSSASTKRWKYDVFLSFRGEDTRKNFTDHLYVALKRKGLRTFRDEEELERGEYINPGLVQAIDESRSAIVVLSPNYASSTWCLDELQKILQLKEESSLQVFPIFYRVDPSSVRKQKGCFAEAFIKHEERFVQDKMKVRKSRDALEKIATICGWHLQNWHEMEFTESIAEEIMSKLLDDELPSDLGMLIGIQPKLDELESIVTMELGGVGFIGIWGIGDIGKTTLARAFYERKLKNFEIHCFLHNIREAYEKEGDKPNEDYLNLARTVIEYARGLPLALKVLGSFLCKRTIVQWKHAPAKFKKVPPNDILKILQVSFDGLDITQKTIFLDIACFFNGMVQDHVIQILEILDNDLHPKIGINVLIEQSLVINYEGHLWVREILQNMGKYIVYEKSPDDAGKRSRLLSLEDAKHGTEAIRGIILTLEKSCDTFWDPEAFSKMSNLKLLIISNCSHVLRFQLNLPYGLKALSKELKSDNMGGSLQSLKSIDLSYSEYLSKTPNFDGIPHLEKLILEGCSNLIEIHRSLGQHKKLVIVNLKDCREVKNLPRKFEMNCLETFVLSGCSRVIKLPEFGKDMERLSKLDLEGTAITKCLNHWAI 608
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral2056g00003 608 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 23 262 IPR044974 GO:0006952
Pral2056g00003 608 SMART till_3 22 162 IPR000157 GO:0007165
Pral2056g00003 608 Pfam NB-ARC domain 268 315 IPR002182 GO:0043531
Pral2056g00003 608 SUPERFAMILY L domain-like 432 601 - -
Pral2056g00003 608 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 183 342 IPR027417 -
Pral2056g00003 608 Pfam TIR domain 22 194 IPR000157 GO:0007165
Pral2056g00003 608 Gene3D - 15 190 IPR035897 -
Pral2056g00003 608 Gene3D Ribonuclease Inhibitor 432 607 IPR032675 -
Pral2056g00003 608 Gene3D - 256 332 IPR042197 -
Pral2056g00003 608 SUPERFAMILY Toll/Interleukin receptor TIR domain 12 165 IPR035897 -
Pral2056g00003 608 FunFam Disease resistance protein (TIR-NBS-LRR class) 19 189 - -
Pral2056g00003 608 PRINTS Disease resistance protein signature 222 237 - -
Pral2056g00003 608 PRINTS Disease resistance protein signature 584 600 - -
Pral2056g00003 608 PRINTS Disease resistance protein signature 469 483 - -
Pral2056g00003 608 SUPERFAMILY "Winged helix" DNA-binding domain 319 420 IPR036390 -
Pral2056g00003 608 ProSiteProfiles TIR domain profile. 21 187 IPR000157 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral2056g00003 Pral-Chr2056 22627 27151 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral2056g00003 270 589 WRKY Transcription Factor Family AT4G12020 30.811 1.13e-33 135
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral2056g00003 - - pcin:129317488 563.918