Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral2040g00001 ATGTCGCAGACTGGCAAGCCGATGCAGGGACTGGGGTTCGATTCTCTCACTACTCGATTCCGCGATTTGTTGGCTTCTGACGAGAACAAGCCTGATTTTAAAGAACTCGATCTGGGTTCTCCTGTTTCTCCATTGAAAACCCCTGCCACTGTTAATGCTGCCGGTGCCGGCGCCCCTAACACCTCAAGCTGCAGCTCGAGCAGCTCTGCCGGATCGGTTTCCGGAAGCAGACAAACCGTTGCCAAGTTGCCCTGTAAACCAGACGGGAAGCCCAGCAACAACTCCGGCGAGCTCCGTGAGACCAACTCAAACGCCTGTGAGAGCCTTCAACCGGCTTTGGCATCCCGACGCACCAAGCCGGGTCATAGGAGATCGGTTTCAGCTGGAGCTCCATTAATATACTCCGGTGGAAGTTCTAGCAGCTGGGGGAATAACGGTCATCCAAATGGTGCGACTTCAGGGACTAATTTGCTCCCAGCCGGCAATATTTGTCCGTCAGGGAAGATCTCAAAAACAGGTTTGGCGCCTCGAACACCCAATAGAACTGATGTTTTGGGTTCAGGGACGGTAAACTATGGCCGAGGCAACATAATGCGCGGTGGCGGGAAATTGGGCAATGGAGGGCACGTCATCGTCTACGACAATGTCCCCGGGAACTCTCAGCTGGGAGGGGTTTCGGACATTGTGAAGCGAGCAATGAGTGCTTCAGATCCTGAGGAAGTGAAAAGAGCTGGAAATGAGCTATACAGAAGCGGTAACTTTGCGGAGGCATTGTCGTTGTACGATCGCGCAATTTCGATATCACCCAATAATCCTGCTTACCGGAGTAATCGGGCGGCAGCGTTGACGGCTCTGGGGAAGTTGGCTGCGGCGGCGAAGGAGTGCGAAGAGGCTGTGAAACTGGATCCTGGTTATGCCAGGGCTCATCAGAGACTGGCTTCACTTTATCTGCGCTTTGGGCAGGTTGAGAATGCCCAGAGCCACCTCTGTCTCCCTGGAAAACAGGTGGATCATTCGGAACTGCACAAGCTGGGGCTATTGGAGAAGCATTTTAAACGATGTGCAGAAGCACGAAAGATCGGTGATTGGAAAAGCGCACTCAGGGAATCAGACGCAGCCATTGCTGTCGGAGCAGATTTCTCTCCCCAGCTTTTTGCTTGTAAAGCTGAAGCCTATTTGAAACTTCATCTGCTTGAGGACGCTGAGTCCACCCTCTCAAACATTCCAAAGCTGGAGGGTTGCTCTCAAACCAAGTTCTTTGGTATGGTTGGTGAAGCGTATGTTCACTTTGTTCGAGCTCAGGTTGAGATGGCCTTAGGAAGATTTGAGAATGCAGTAGCAGAAGCAGAAAAGGCTAGTTTGGTAGACTATAGCAATGTGGAAGTTGCAAGGGTAGTAAATACCGTGAAAATGGTGGCGGGGGCTCGCTCTCGAGGCAACGATCTTTTTGGCCAAGGAAAATTTTCTGAAGCTTGCTCTGCTTATGGAGAAGGCCTCAAGATTGATAGTTCCAACTATGTCTTGTTCTGCAATAGAGCTGTTTGCTGGTCTAAACTTGGGCTGTGGGAAAAGTCTGTCGAGGACTGCAACCATGCCCTGCGAATACAACCAAACTGTACCAAGGCCCTTCTTCGTAGGGCTGTCTCAAATTCAAAGCTTGAAAGGTGGGGAGATGCTATAAGAGATTACGAGGCATTAAAGCATGAACTTTCTGGAGACAGTAAAGTTGCTGAGTCTCTCCGTCAGGCTCAGCTTGCATTGAGGAAATCTCGTGGGGAAGAATGTGGTTCAAAACTTGTTGAGGTTGAAGAGGTCTCTACATTAGATAGATTCAAAGCCGCAGTTGCTTCTTCTGGTATCTCAGTGGTTCATTTCAAGAAGGCATCTAATGAACGATGTCAAGAAATATCCCCCTTCATAAATACGCTCTGCATTCGATACCCAGATGTTAAATTCATCAAGGTGGATTTGGAAGACTGTACAAGTGTAGGAAAAGCTGAGAGCATAAGAACTGTGCCGACCTTCAGAATATATGCAAATGGAGAGAAGGTGATGGAGATGATAAGGCCGAGTCATCAGTTATTGGAGGACTCTGTGAGGAACTGTTGTAATCTCTAG 2118 0.4939 MSQTGKPMQGLGFDSLTTRFRDLLASDENKPDFKELDLGSPVSPLKTPATVNAAGAGAPNTSSCSSSSSAGSVSGSRQTVAKLPCKPDGKPSNNSGELRETNSNACESLQPALASRRTKPGHRRSVSAGAPLIYSGGSSSSWGNNGHPNGATSGTNLLPAGNICPSGKISKTGLAPRTPNRTDVLGSGTVNYGRGNIMRGGGKLGNGGHVIVYDNVPGNSQLGGVSDIVKRAMSASDPEEVKRAGNELYRSGNFAEALSLYDRAISISPNNPAYRSNRAAALTALGKLAAAAKECEEAVKLDPGYARAHQRLASLYLRFGQVENAQSHLCLPGKQVDHSELHKLGLLEKHFKRCAEARKIGDWKSALRESDAAIAVGADFSPQLFACKAEAYLKLHLLEDAESTLSNIPKLEGCSQTKFFGMVGEAYVHFVRAQVEMALGRFENAVAEAEKASLVDYSNVEVARVVNTVKMVAGARSRGNDLFGQGKFSEACSAYGEGLKIDSSNYVLFCNRAVCWSKLGLWEKSVEDCNHALRIQPNCTKALLRRAVSNSKLERWGDAIRDYEALKHELSGDSKVAESLRQAQLALRKSRGEECGSKLVEVEEVSTLDRFKAAVASSGISVVHFKKASNERCQEISPFINTLCIRYPDVKFIKVDLEDCTSVGKAESIRTVPTFRIYANGEKVMEMIRPSHQLLEDSVRNCCNL 705
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral2040g00001 705 PANTHER TPR REPEAT-CONTAINING THIOREDOXIN 25 700 IPR044534 -
Pral2040g00001 705 MobiDBLite consensus disorder prediction 27 158 - -
Pral2040g00001 705 MobiDBLite consensus disorder prediction 94 111 - -
Pral2040g00001 705 SMART tpr_5 540 573 IPR019734 GO:0005515
Pral2040g00001 705 SMART tpr_5 472 505 IPR019734 GO:0005515
Pral2040g00001 705 SMART tpr_5 506 539 IPR019734 GO:0005515
Pral2040g00001 705 SMART tpr_5 272 305 IPR019734 GO:0005515
Pral2040g00001 705 SMART tpr_5 238 271 IPR019734 GO:0005515
Pral2040g00001 705 SMART tpr_5 426 459 IPR019734 GO:0005515
Pral2040g00001 705 Gene3D Tetratricopeptide repeat domain 236 590 IPR011990 GO:0005515
Pral2040g00001 705 SUPERFAMILY TPR-like 239 328 IPR011990 GO:0005515
Pral2040g00001 705 Pfam Thioredoxin 607 689 IPR013766 -
Pral2040g00001 705 Gene3D Glutaredoxin 591 702 - -
Pral2040g00001 705 SUPERFAMILY Thioredoxin-like 511 692 IPR036249 -
Pral2040g00001 705 MobiDBLite consensus disorder prediction 132 158 - -
Pral2040g00001 705 CDD TRX_family 611 696 - -
Pral2040g00001 705 Coils Coil 432 452 - -
Pral2040g00001 705 Pfam TPR repeat 245 286 - -
Pral2040g00001 705 SUPERFAMILY TPR-like 385 564 IPR011990 GO:0005515
Pral2040g00001 705 ProSiteProfiles TPR repeat profile. 238 271 IPR019734 GO:0005515
Pral2040g00001 705 FunFam TPR repeat-containing thioredoxin TTL4 599 703 - -
Pral2040g00001 705 MobiDBLite consensus disorder prediction 54 79 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral2040g00001 Pral-Chr2040 2610 6395 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral2040g00001 239 329 U-box Gene Family AT3G07370 29.670 1.48e-06 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral2040g00001 - - jre:108981778 862.062