Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral201g00001 ATGGCGGCGGGTGGAAAACTCTTCGGGGCATCCAACATGACAACACTCTTGCTCCAAAACGAAAGACTTCCTCCCTCTTCTGACGTTCTCGACTCTATCTGGACTCACACCTCAAACCCCACTTTCCCAGGATCAAAATCCATGGTGAATTTTGAGAGGCTGAGTGGGTGCAGAGTGACAGACCGGCCATTTCTACACGGAGTGGAGAAAGAAGAGACAGGGGAGGAAGATTACGAAGTGTGCTTTCATCAGGCTGGGAAGAAGAGAAGGCTCACGACCGAGCAAGTTCAGTTTCTGGAGAAGAACTTCGAGGTGGAGAACAAGCTAGAACCAGAGAGGAAGGTTCAGCTAGCGAAGGAACTAGGATTGCAGCCAAGGCAAGTTGCTATATGGTTCCAGAACAGAAGGGCAAGGTTCAAGACCAAACAGCTTGAGCAAGACTATGGCAAGTTGAAAGCTAGCTATGATAAGCTCAAGAGTGATCATGACAATCTTGTCAAGGAGAACGACAAGTTAAAAGAAGAGGTGAAATCCCTAAAAGACAGATTAAATGCGAGGGAGAAAGAGAAAGAAGATTCTCACAAGTCAGAGGCCAATGCGGATCCTGGAGATTCAGAAGCAGTGAATTCAGCAGAAGAAGAGCCACGGGAAGATGGAACCAAAGACGAAGGAGTAGCTGCCAAGGGAATAACGGTGTGGAAGCAGCAGGAAGACGCGAATTCATCGGCGAAAAGCGACGTGTTGGATTCGGAGGACACGGAGGCGAACCACCATTCGTGGATGCAGCAGGAGCCGGCGGATTCGTCGCCGGCGGCGGAAGCTGAAGCTGCGGAACACTCGGATTTCTCGCAGGACGAAGAAGACGATAAACTGATGAGGAGCAACCTGCTGAATCTGGCTTGCTTCCCGAAGGTAGAAGAAGATGGATGCTACGACGATCCTCCCGAAGGTTGTAACAATTTTGGATTCCCTGTTGAAGATCAGGCCTTCTGTTTTTGGCCCTACTGA 1008 0.498 MAAGGKLFGASNMTTLLLQNERLPPSSDVLDSIWTHTSNPTFPGSKSMVNFERLSGCRVTDRPFLHGVEKEETGEEDYEVCFHQAGKKRRLTTEQVQFLEKNFEVENKLEPERKVQLAKELGLQPRQVAIWFQNRRARFKTKQLEQDYGKLKASYDKLKSDHDNLVKENDKLKEEVKSLKDRLNAREKEKEDSHKSEANADPGDSEAVNSAEEEPREDGTKDEGVAAKGITVWKQQEDANSSAKSDVLDSEDTEANHHSWMQQEPADSSPAAEAEAAEHSDFSQDEEDDKLMRSNLLNLACFPKVEEDGCYDDPPEGCNNFGFPVEDQAFCFWPY 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral201g00001 335 FunFam Homeobox-leucine zipper protein HAT5 80 144 - -
Pral201g00001 335 Coils Coil 141 193 - -
Pral201g00001 335 MobiDBLite consensus disorder prediction 182 201 - -
Pral201g00001 335 SUPERFAMILY Homeodomain-like 78 144 IPR009057 -
Pral201g00001 335 ProSitePatterns 'Homeobox' domain signature. 117 140 IPR017970 GO:0000981|GO:0006355
Pral201g00001 335 Pfam Homeodomain 87 140 IPR001356 GO:0003677
Pral201g00001 335 MobiDBLite consensus disorder prediction 182 290 - -
Pral201g00001 335 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 73 253 IPR045224 GO:0003700
Pral201g00001 335 SMART HOX_1 85 146 IPR001356 GO:0003677
Pral201g00001 335 CDD homeodomain 87 143 IPR001356 GO:0003677
Pral201g00001 335 Gene3D - 137 188 - -
Pral201g00001 335 MobiDBLite consensus disorder prediction 244 258 - -
Pral201g00001 335 PRINTS Lambda-repressor HTH signature 113 122 IPR000047 GO:0003677
Pral201g00001 335 PRINTS Lambda-repressor HTH signature 122 138 IPR000047 GO:0003677
Pral201g00001 335 Gene3D - 90 136 - -
Pral201g00001 335 ProSiteProfiles 'Homeobox' domain profile. 82 142 IPR001356 GO:0003677
Pral201g00001 335 MobiDBLite consensus disorder prediction 209 224 - -
Pral201g00001 335 Pfam Homeobox associated leucine zipper 142 183 IPR003106 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral201g00001 Pral-Chr201 33983 35952 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral201g00001 44 203 Homeobox Transcription Factor Family AT3G01470 52.500 6.10e-45 153
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Pral201g00001 Homeodomain 4.7e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral201g00001 K09338 - qsa:O6P43_025407 341.658