Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral2018g00138 ATGAGCCTAGTTAGAGGGAAGAAGAGAACTCTCGCTCACAACACAAAAATGTTCGATGGAGTCCCAGACCAATTCCATCAGTTCATGGCACCCACAACCTCATCACTTCCACTTCACTTGCCTTTCCCTCTTAATGCCACTCTGACACCCAATACCACTATCTTCCCTACCATTGATCCTTATCCCTTGCCTCCGCACCACCCACCCCCTTCTCCTCCCCACAAACACCAACAGGATAACAGCTTGGACAGAGCGTCCATGAACTCGGAGGTTGAAAGAGAGAGGCAATTACCTGAGCTCATCAATTCCTGCTGGACTCACGATGAAGTGCTTGCGCTATTCAGGATCAGATCTAGCATGCAAACCTGCTTCCCAGACCTCACATGGGAACATATCTCAAGGAAGCTAGCAGAGTTTGGATTTAAGAAGAGTGCGGAGAAATGCAAGGAGAAGTATGAGGAGGAAAGCAGATACTTGAACCACATTAATTACAACGAAAATTATTGTTTTATTAGTGAGTTCGAACAAGAGCTTTATCAAGAGGAAGGAGATGATCAAGACCCTGAAGCCGAGGTTGGGACAGAAGAAAAGTCGACGCCGCAGCTGCAAGAGCCAAGGGAGGGACAAGAAAAGACGTCAGGCCATGCATTGGAAGAGGGTTCTACAAGACATGACACATCAGCAGCACCTGTCATTACGAAACGCTGCGTGGCAGAGAAACCAAAGGAGAGAAAGAGAAAGAAGCAAGACGGTAAATTTGAGATGTTTAAGGACTTCTGTGAGAACGTTATCAGCAGGATGATGGCTCAACAAGAGGAGATGCACAATAAGCTTCTTGAAGATATGATGAAAAGAGATGAGGACAAGTTTGCGAGAGAAGAAGCTTGGAAGAAACAAGAGTTAGACAGGATGAACGAGGAGCTCGAAATGATGGCGCACGAGCAAGCTCTGGCGGGCAATCGGCAGGCCACAGTAATAGAATTCTTGAACAAATGCGCGGCGAGCTCTCCCAAATTAACAAATAATAGTTCAGATCCGAACGCATTGCATTCGCAAAACCTTCAATTTTCTGTCAAGATTAATAACGACAACAATGAGCCACCACCTTCTTTTACAATGATATCGCCAACCCATCAAGATACAATAAACACTTCTGTAGCTTTACCCGTCATGAACTCTAGAGCAGCAAGAGCAGTAGAAAACCCTAGTTCAAGTCATGGCCAGGGGGGATTACAAGTTGCAAAGAACCCTGGTTGTCTCAATTTCGTTTCAACATATAAGGCGTCGTCGAGTGAGAAAGGAGACGTGGGGAGGAGATGGCCGAGGGAAGAAGTGTTGGCTTTAATAAACCTGAGGTGCAGTCTGAATAACAATAATATTAATGAAGACAAGGAGGGAATCAAGGCTCCACTGTGGGAAAGAATCTCACAGGGGATGTCAGACATGGGATACAAGAGAAGTGCGAAGAGGTGCAAGGAGAAATGGGAGAACATAAACAAGTACTTTAGAAAAACTAGGGATATTAACAAGAAGAGATCGCGTGACTCCAGGACTTGTCCTTATTTCCATCTACTCGCTACTTTGTATTTTCAAGAAAAGCTTGTTCCCGATCAATCTGAATTAGGGCCACAAAGCAACATGGTTTCACCACCAAATCACCCTTCGCATCAAGTCATGCACTTCGACGGAGGTGACAACACTGTGATGCAGTGTACCTAA 1719 0.4532 MSLVRGKKRTLAHNTKMFDGVPDQFHQFMAPTTSSLPLHLPFPLNATLTPNTTIFPTIDPYPLPPHHPPPSPPHKHQQDNSLDRASMNSEVERERQLPELINSCWTHDEVLALFRIRSSMQTCFPDLTWEHISRKLAEFGFKKSAEKCKEKYEEESRYLNHINYNENYCFISEFEQELYQEEGDDQDPEAEVGTEEKSTPQLQEPREGQEKTSGHALEEGSTRHDTSAAPVITKRCVAEKPKERKRKKQDGKFEMFKDFCENVISRMMAQQEEMHNKLLEDMMKRDEDKFAREEAWKKQELDRMNEELEMMAHEQALAGNRQATVIEFLNKCAASSPKLTNNSSDPNALHSQNLQFSVKINNDNNEPPPSFTMISPTHQDTINTSVALPVMNSRAARAVENPSSSHGQGGLQVAKNPGCLNFVSTYKASSSEKGDVGRRWPREEVLALINLRCSLNNNNINEDKEGIKAPLWERISQGMSDMGYKRSAKRCKEKWENINKYFRKTRDINKKRSRDSRTCPYFHLLATLYFQEKLVPDQSELGPQSNMVSPPNHPSHQVMHFDGGDNTVMQCT 572
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral2018g00138 572 MobiDBLite consensus disorder prediction 77 93 - -
Pral2018g00138 572 ProSiteProfiles Myb-like domain profile. 439 499 IPR001005 -
Pral2018g00138 572 MobiDBLite consensus disorder prediction 57 75 - -
Pral2018g00138 572 Gene3D - 440 504 - -
Pral2018g00138 572 Gene3D - 105 159 - -
Pral2018g00138 572 MobiDBLite consensus disorder prediction 180 230 - -
Pral2018g00138 572 ProSiteProfiles Myb-like domain profile. 97 156 IPR001005 -
Pral2018g00138 572 SMART sant 101 158 IPR001005 -
Pral2018g00138 572 SMART sant 436 501 IPR001005 -
Pral2018g00138 572 FunFam Trihelix transcription factor GT-2 440 504 - -
Pral2018g00138 572 PANTHER FI21293P1 65 550 - -
Pral2018g00138 572 FunFam Trihelix transcription factor GT-2 105 161 - -
Pral2018g00138 572 Pfam Myb/SANT-like DNA-binding domain 438 526 IPR044822 -
Pral2018g00138 572 Pfam Myb/SANT-like DNA-binding domain 103 158 IPR044822 -
Pral2018g00138 572 MobiDBLite consensus disorder prediction 200 222 - -
Pral2018g00138 572 MobiDBLite consensus disorder prediction 55 93 - -
Pral2018g00138 572 CDD GT1 438 506 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral2018g00138 Pral-Chr2018 655664 658053 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral2018g00138 105 572 Trihelix Transcription Factor Family AT5G28300 36.630 4.26e-82 267
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Pral2018g00138 Myb_DNA-bind_4 2.8e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral2018g00138 - - gmx:100795995 489.96