Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral2018g00123 ATGGCCTGCAATTCTTCGGAGGGATTGGGTGACGATTTTTTGGAGCAGATCTTGGCTGTACCCCCTTCTGCTTACTCCAACAGTGACGGCTCCGCCATGCCTCCAATGGTGTTGCAGTTAGGCTCCGGCAGCAGTGCTGCTGCTGGCGCCGGCTTGCGCGAGTCCTTAGGCATAGGGAGGGGCATGCCCTTGGGCTTGAATTTGGAGCAAGGGTTTCTCGGACAAGATGGTAGCAGAGTACGGTACGGCGGTGATGTTGTGGACGGCCACAATGTAGCTAATCGCCATATCCATCTTAATAATTCCAACAATACCATCAACCCTTCTTCCTCTTCAACTTCTGCTATCTCTGATAGGGAATCCTTGCAGAGGGCACAGGGCCTGTTTTCGGCGTTTGGACCGTTGGACCTTCGGCCGACGACGGTGCCATCCCCGCCGCCTGCTCCCTCTCAACTCCCGCATCATCAGCCATTTCATAGCCAACCCCAAATTCAGGGGCCTGTTGCTGCTGGGCCTCAACCACCTGCCATTCGCCCTAGAGTGCGAGCAAGAAGAGGGCAAGCCACTGATCCCCATAGTATTGCTGAACGGTTGCGCCGTGAAAGGATTGCTGATAGAATGAAGGCTTTGCAGGAATTAGTTCCCACCGCCAATAAGACTGACAGAGCGGCTATGCTTGATGAAATTGTGGACTACGTGAAGTTTCTCAGACTCCAAGTTAAGGTCCTCAGTATGAGTAGACTGGGGGGAGCTGGTGCCGTAGCTCAGCTTGTTGCGGATGTTCCTTTGTCTGCAATGGAGGCGAGGGAGGGCGTTGACGGCGGGGGGAATCAAGCAGCCTGGGAGAAGTGGTCAAACGACGGCACAGAACAAGAGGTTGCAAAACTGATGGAAGAAGATGTTGGAGCTGCCATGCAATTCCTTCAGACCAAGGCACTCTGCATCATGCCGATATCTCTGGCTTCAGCCATTTTTCGTACGTCCCAATCAGATGCTTCTGCGCTCACCAAGTCCGAACCAAACAGCCATTCTTAG 1035 0.5372 MACNSSEGLGDDFLEQILAVPPSAYSNSDGSAMPPMVLQLGSGSSAAAGAGLRESLGIGRGMPLGLNLEQGFLGQDGSRVRYGGDVVDGHNVANRHIHLNNSNNTINPSSSSTSAISDRESLQRAQGLFSAFGPLDLRPTTVPSPPPAPSQLPHHQPFHSQPQIQGPVAAGPQPPAIRPRVRARRGQATDPHSIAERLRRERIADRMKALQELVPTANKTDRAAMLDEIVDYVKFLRLQVKVLSMSRLGGAGAVAQLVADVPLSAMEAREGVDGGGNQAAWEKWSNDGTEQEVAKLMEEDVGAAMQFLQTKALCIMPISLASAIFRTSQSDASALTKSEPNSHS 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral2018g00123 344 Pfam Helix-loop-helix DNA-binding domain 192 236 IPR011598 GO:0046983
Pral2018g00123 344 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 185 246 IPR036638 GO:0046983
Pral2018g00123 344 MobiDBLite consensus disorder prediction 139 153 - -
Pral2018g00123 344 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 187 236 IPR011598 GO:0046983
Pral2018g00123 344 SMART finulus 193 242 IPR011598 GO:0046983
Pral2018g00123 344 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 48 323 - -
Pral2018g00123 344 MobiDBLite consensus disorder prediction 133 191 - -
Pral2018g00123 344 MobiDBLite consensus disorder prediction 99 121 - -
Pral2018g00123 344 Gene3D - 182 244 IPR036638 GO:0046983
Pral2018g00123 344 FunFam Transcription factor bHLH66 184 249 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral2018g00123 Pral-Chr2018 587711 593297 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral2018g00123 158 341 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G02590 73.514 2.10e-81 246
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pral2018g00123 HLH 5.3e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral2018g00123 - - qsa:O6P43_007633 374.015