Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral2018g00120 ATGGCCGAAGAAGCCAAGGCCAAAGGAAATGCCGCTTTCTCTTCCGGTGACTTCGACGCCGCCATCCGTCACTTTTCCGAAGCTATCTCTCTCTCCCCCGGTAACCATGTCCTTTACTCCAATCGATCGGCCGCTTATGCCTCCCTTCACAAATACTCTGAAGCGTTAACCGATGCCAAGAAGACCGTCGAGCTCAAGCCCGATTGGTCCAAGGGCTACAGCCGTCTCGGCGCCGCTCATCTTGGACTCGGCCAACACGACGACGCTATTGCTGCTTATAAGAAGGGCCTTGAAATCGACCCCAATAATGAACCACTTAAATCCGGTTTGGCTGATGCCCGGGCCGCGGCTTCTAGGTCACGTTCCGTGCCGCCCATGGGCAATCCTTTCGGAGACGCTTTCTCTGGACCCGAGATGTGGGCTAGGCTCACTGCCGATCCCACCACCAGAGCATATCTGCAGCAACCTGATTTCGTGAAGATGATGCAGGATATTCAGAAAAATCCCAACAATCTGAACTTGTATATGAAAGACCAAAGAATCATGCAAGCCCTTGGAGTTTTGCTCAACCTCAAGATTCGCACCCCGAACGAGGACACTGATATGCCCGAGGCTTCCCCTTCGCCTCCGCCGGCAGAGAGGAAGAGAGCTGCTGAAGCTGAACCGGCGAAGGAAGAGAAGCGGCCCGAGCCCGGGTCCATGGAATTGACGGAGGAGGAGAAGGAAGCGAAGGAGAAAAAAGCCCAGGCCCAGAGGGAAAAGGAGGCAGGCAATGCGGCTTACAAAAAGAAGGATTTTGATGCGGCAATCCAGCATTACTCCAAGGCTATGGAATTGGATGATGAGGATATATCGTATCTCACAAACCGTGCTGCTGTTTACTTGGAAATGGGAAAGTTAGAAGAATGCATGAAAGATTGTGACAAGGCTGTAGAAAGGGGAAGAGAATTGAGATCAGACTTTAAGATGATTGCAAGAGCTTTGACAAGGAAGGGAACTGCCCTGGTGAAAATGGCAAAATGCCCAAAGGATTATGAACCTGCCATTGAGACTTTCCAAAAGGCACTTACAGAGCATCGCAACCCTGACACCTTGAAGAAATTGAATGATGCAGAAAAGGCTAAGAAAGAACTTGAACAGCAAGAATACTTTGATCCGATATTGGCTGACGAGGAGCGTGAAAAAGGTAATGATTTCTTTAAGCAACAGAATTATCCCGAAGCTGTGAAGCATTACACTGAGTCTTTAAGAAGGAATCCTAAGGATCCTAGGACTTACAGTAACAGAGCTGCAAGCTACACAAAACTTGGCGCAATGCCTGAGGGTTTGAAAGATGCTGACAAATGCATTGAGCTGGATCCAACTTTCGTAAAGGGTTATACTAGAAAAGGTGCCATACAGTTTTTCATGAAAGAATATGACAAAGCTTTGGAAACGTATCAAGAGGGGTTGAAACATGATTCAAACAACCAGGAGCTGCTTGACGGCATAAGAAGGTGCGTAGAACAAATTAATAAGGCCAGCCGTGGAGATATAAGTCCTGAGGAGTTGAAGGAGAGACAGGCAAAGGCAATGCAGGACCCGGAGATACAGAACATCCTCCAAGACCCTATTATGAGACAGGTATTGGTCGATTTTCAGGAAAATCCCAAGGCTGCTCAGGAGCATACGAAGAATCCAATGGTGATGAACAAGATCCAGAAGTTGGTCAGTGCTGGCATTGTCCAGATTAGATAA 1737 0.4813 MAEEAKAKGNAAFSSGDFDAAIRHFSEAISLSPGNHVLYSNRSAAYASLHKYSEALTDAKKTVELKPDWSKGYSRLGAAHLGLGQHDDAIAAYKKGLEIDPNNEPLKSGLADARAAASRSRSVPPMGNPFGDAFSGPEMWARLTADPTTRAYLQQPDFVKMMQDIQKNPNNLNLYMKDQRIMQALGVLLNLKIRTPNEDTDMPEASPSPPPAERKRAAEAEPAKEEKRPEPGSMELTEEEKEAKEKKAQAQREKEAGNAAYKKKDFDAAIQHYSKAMELDDEDISYLTNRAAVYLEMGKLEECMKDCDKAVERGRELRSDFKMIARALTRKGTALVKMAKCPKDYEPAIETFQKALTEHRNPDTLKKLNDAEKAKKELEQQEYFDPILADEEREKGNDFFKQQNYPEAVKHYTESLRRNPKDPRTYSNRAASYTKLGAMPEGLKDADKCIELDPTFVKGYTRKGAIQFFMKEYDKALETYQEGLKHDSNNQELLDGIRRCVEQINKASRGDISPEELKERQAKAMQDPEIQNILQDPIMRQVLVDFQENPKAAQEHTKNPMVMNKIQKLVSAGIVQIR 578
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral2018g00120 578 Pfam Tetratricopeptide repeat 7 59 - -
Pral2018g00120 578 Coils Coil 233 260 - -
Pral2018g00120 578 FunFam Stress-induced phosphoprotein 1 247 381 - -
Pral2018g00120 578 SUPERFAMILY TPR-like 8 495 IPR011990 GO:0005515
Pral2018g00120 578 Gene3D Tetratricopeptide repeat domain 247 383 IPR011990 GO:0005515
Pral2018g00120 578 SMART CBM 136 175 IPR006636 -
Pral2018g00120 578 SMART CBM 527 566 IPR006636 -
Pral2018g00120 578 Gene3D Tetratricopeptide repeat domain 388 508 IPR011990 GO:0005515
Pral2018g00120 578 MobiDBLite consensus disorder prediction 195 259 - -
Pral2018g00120 578 ProSiteProfiles TPR repeat region circular profile. 70 103 - -
Pral2018g00120 578 ProSiteProfiles TPR repeat profile. 457 490 IPR019734 GO:0005515
Pral2018g00120 578 SMART tpr_5 423 456 IPR019734 GO:0005515
Pral2018g00120 578 SMART tpr_5 250 283 IPR019734 GO:0005515
Pral2018g00120 578 SMART tpr_5 325 362 IPR019734 GO:0005515
Pral2018g00120 578 SMART tpr_5 457 490 IPR019734 GO:0005515
Pral2018g00120 578 SMART tpr_5 36 69 IPR019734 GO:0005515
Pral2018g00120 578 SMART tpr_5 70 103 IPR019734 GO:0005515
Pral2018g00120 578 SMART tpr_5 389 422 IPR019734 GO:0005515
Pral2018g00120 578 SMART tpr_5 284 317 IPR019734 GO:0005515
Pral2018g00120 578 SMART tpr_5 2 35 IPR019734 GO:0005515
Pral2018g00120 578 FunFam Stress-induced phosphoprotein 1 1 116 - -
Pral2018g00120 578 ProSiteProfiles TPR repeat profile. 250 283 IPR019734 GO:0005515
Pral2018g00120 578 PANTHER TPR REPEAT CONTAINING PROTEIN 2 550 - -
Pral2018g00120 578 FunFam Putative stress-induced-phosphoprotein 1 126 194 - -
Pral2018g00120 578 Pfam STI1 domain 519 570 IPR041243 -
Pral2018g00120 578 Pfam STI1 domain 137 190 IPR041243 -
Pral2018g00120 578 ProSiteProfiles TPR repeat profile. 389 422 IPR019734 GO:0005515
Pral2018g00120 578 ProSiteProfiles TPR repeat profile. 36 69 IPR019734 GO:0005515
Pral2018g00120 578 Pfam Tetratricopeptide repeat 71 103 IPR001440 GO:0005515
Pral2018g00120 578 Pfam Tetratricopeptide repeat 458 490 IPR001440 GO:0005515
Pral2018g00120 578 Gene3D - 127 193 - -
Pral2018g00120 578 Gene3D - 509 578 - -
Pral2018g00120 578 ProSiteProfiles TPR repeat profile. 70 103 IPR019734 GO:0005515
Pral2018g00120 578 Coils Coil 361 381 - -
Pral2018g00120 578 Pfam TPR repeat 257 298 - -
Pral2018g00120 578 Pfam TPR repeat 396 437 - -
Pral2018g00120 578 MobiDBLite consensus disorder prediction 214 259 - -
Pral2018g00120 578 FunFam Stress-induced-phosphoprotein 1 (Hsp70/Hsp90-organizing) 510 578 - -
Pral2018g00120 578 Gene3D Tetratricopeptide repeat domain 1 115 IPR011990 GO:0005515
Pral2018g00120 578 FunFam hsp70-Hsp90 organizing protein 3-like 388 502 - -
Pral2018g00120 578 ProSiteProfiles TPR repeat profile. 2 35 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral2018g00120 Pral-Chr2018 578703 581736 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral2018g00120 388 484 U-box Gene Family AT3G07370 27.835 4.55e-06 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral2018g00120 K09553 - qsa:O6P43_034125 952.199