Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral2018g00119 ATGACAGGGTTGAAAGAGGCAGAGCCAGATAAGTACAGCGTGATTAATTTCGAGGAGACCGAGTTACGACTCGGACTGCCCGGTGCTTCCTCTGCAGCCGCCTCCGACTCCGAGCCTGCACTCAAAAGTACCAGGTGCGCTGGCGGCAAGAGATGCTTCTCCGACACCGCTGTGGATTTGAAGCTCAATCTGTCTTCCAACAGTGCTACCCAGTCAACCCACAAGCCAACCGACAACACCGCTGCTGCTTCTCCCTCTAACGATCCTGCGAAGCCACCCGCTAAGGCGCAAGTAGTGGGTTGGCCACCGGTGCGATCGTCCAGGAAGAACATCGGGGCATCGCAGAGCCAGAAGAATCACAAGGAAGAAGGCGCTACGTTCGTGAAGGTGAGCATGGACGGCGCGCCTTATCTGCGCAAGGTGGACTTGAAACAGTACCAGAGCTACCAACAGCTGTCAGGGGCCCTTGCTAAAATGTTCAGCTCCTTCACCAACGCCAACTATGGCCCCCCTCAAGCCTCCAACCACTTCCTCTGCGAGAGCAAACTGATCGATCTCCTCAACGGCTCCGACTACGTCCCCACTTACGAAGACAAGGACGGAGATTGGATGCTCGTCGGCGACGTCCCCTGGGAAATGTTCGTGGAATCCTGCAAACGCCTGCGCATCATGAAAGGATCCGACGCAATTGGGCTAGCGCCGAGGGCAGTGGAAAAGTGCAAGAACAGAAGCTGA 735 0.5633 MTGLKEAEPDKYSVINFEETELRLGLPGASSAAASDSEPALKSTRCAGGKRCFSDTAVDLKLNLSSNSATQSTHKPTDNTAAASPSNDPAKPPAKAQVVGWPPVRSSRKNIGASQSQKNHKEEGATFVKVSMDGAPYLRKVDLKQYQSYQQLSGALAKMFSSFTNANYGPPQASNHFLCESKLIDLLNGSDYVPTYEDKDGDWMLVGDVPWEMFVESCKRLRIMKGSDAIGLAPRAVEKCKNRS 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral2018g00119 244 ProSiteProfiles PB1 domain profile. 125 226 IPR000270 GO:0005515
Pral2018g00119 244 FunFam Auxin-responsive protein 120 236 - -
Pral2018g00119 244 MobiDBLite consensus disorder prediction 65 86 - -
Pral2018g00119 244 Pfam AUX/IAA family 19 235 IPR033389 -
Pral2018g00119 244 SUPERFAMILY CAD & PB1 domains 115 225 - -
Pral2018g00119 244 Gene3D - 119 238 - -
Pral2018g00119 244 MobiDBLite consensus disorder prediction 27 47 - -
Pral2018g00119 244 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 16 231 IPR003311 GO:0005634|GO:0006355
Pral2018g00119 244 MobiDBLite consensus disorder prediction 65 125 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral2018g00119 Pral-Chr2018 573606 576514 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral2018g00119 107 238 B3 DNA Binding Superfamily AT1G30330 28.030 1.06e-08 53.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Pral2018g00119 AUX_IAA 2.6e-80 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral2018g00119 K14484 - gmx:100796888 305.449