Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral2018g00116 ATGGCGAGCCAGGTGGTCAAAGTGGGGAGGGAGAAGCTGGAAGCGTGCATGACATGCCCTCTTTGTCATAAACTGTTGAAGGATGCTACTACCATCTCTCTCTGCCTTCATACGTTCTGCAGGAAATGCATATACGAGAGATTCTCAGATGAGGAAGCAGATTGCTGTCCAGTATGCAATATTGACTTGGGCTGTCTTCCGGTGGAAAAACTGAGGCCAGATCACAATTTGCAAGATATTAGAGCCAAAATATTCCCTTTGAGACGAAGAAAGGTTAAGGCGCCAGAGGCATTACCTTCAGTACCTTTGCCAGTAAAAAGGAAGGAAAGATCACTTTCATCATTGGTGATTTCTGCTCCTAAAGTTTCAATGCAGACTGGCTTCACAGGAAAGAGAACAAAAACTGGTACAAGAAAGGCTGCTGCTTTACGCGGATGCAATTTTGCTGTTCATGAATCCATAAAGAAGGAAGAAGTCTATACCGAGGATAACCCTGATTCTTCCACAGCTGAGCCTTCTAAGAAGAATAGGCCAAACGAAGATGCAGAGAACAATGTGGACCTTCCAGAAGGGAAAGTTGATCTCTGGACGCCCTTGAACTGTCTTGTTGAAGCTGCCAACAGAACAAAATCCTCAAAGTTAACTTCACAAGGCCTGTCTCTTGCCAAATCAGAGCCTCCAGCTACTCCCAATGGTGGACTAAGCGTGCCTGAAATTACAGGCAAATCAGAACCCTCTGCTTCTGTCCCTAGTGAATTACGTATGTCTAAAACCAAAAACAAGGATAACGGACATAAAACAAAATTTGGAGATGAGAAGGATGAAAATGTTGTGCCTCCAGGACAAGTGAGGCGGAGAAGGGTGCGTTCAGCTGGTCAGAAAAGAGCTGCAGCTCCTGAGATTTCTGCCTCAGCCCAAGTTATGCTAGATGCAGTTCGGGGCAGGGGTAACAGAGAAAACTGTCCTATTTGGTTTTCATTGGTTGCTTCAGAAGACCAGAAAGGAGATATTCCCTTGCCACAGATTTCAGCATGCTACCTGAGAATAAAGGATGGTACTGTGCCGGTCTCGTATATTCAAAAGTACCTTGTTAAGAAACTTAATCTTGCCAGCGAAGCAGAGGTGGAAATAATGTGCCGCGGTCGACCGGTGATGCCATCTTTGCAACTGCATAACTTAGTTGATCTCTGGTTCAGGACTGCCTCATCCTCTAAAAAGATTCCTGCTTCTGTTGGCTCCTCCGCCAAGGACTTCGTTATGGTTTTATCATATTGTCGGAAGGCCCTCCCTCTTTAG 1296 0.4545 MASQVVKVGREKLEACMTCPLCHKLLKDATTISLCLHTFCRKCIYERFSDEEADCCPVCNIDLGCLPVEKLRPDHNLQDIRAKIFPLRRRKVKAPEALPSVPLPVKRKERSLSSLVISAPKVSMQTGFTGKRTKTGTRKAAALRGCNFAVHESIKKEEVYTEDNPDSSTAEPSKKNRPNEDAENNVDLPEGKVDLWTPLNCLVEAANRTKSSKLTSQGLSLAKSEPPATPNGGLSVPEITGKSEPSASVPSELRMSKTKNKDNGHKTKFGDEKDENVVPPGQVRRRRVRSAGQKRAAAPEISASAQVMLDAVRGRGNRENCPIWFSLVASEDQKGDIPLPQISACYLRIKDGTVPVSYIQKYLVKKLNLASEAEVEIMCRGRPVMPSLQLHNLVDLWFRTASSSKKIPASVGSSAKDFVMVLSYCRKALPL 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral2018g00116 431 SMART ring_2 19 59 IPR001841 -
Pral2018g00116 431 Gene3D - 305 407 - -
Pral2018g00116 431 MobiDBLite consensus disorder prediction 210 224 - -
Pral2018g00116 431 ProSiteProfiles Zinc finger RING-type profile. 19 60 IPR001841 -
Pral2018g00116 431 MobiDBLite consensus disorder prediction 210 278 - -
Pral2018g00116 431 MobiDBLite consensus disorder prediction 157 188 - -
Pral2018g00116 431 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 3 109 IPR013083 -
Pral2018g00116 431 Pfam Zinc finger, C3HC4 type (RING finger) 19 59 - -
Pral2018g00116 431 MobiDBLite consensus disorder prediction 255 278 - -
Pral2018g00116 431 ProSitePatterns Zinc finger RING-type signature. 35 44 IPR017907 -
Pral2018g00116 431 MobiDBLite consensus disorder prediction 157 191 - -
Pral2018g00116 431 CDD RING-HC_PCGF 17 60 - -
Pral2018g00116 431 SUPERFAMILY RING/U-box 12 84 - -
Pral2018g00116 431 PANTHER E3 UBIQUITIN PROTEIN LIGASE DRIP1 1 428 IPR044807 GO:0004842
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral2018g00116 Pral-Chr2018 550482 555365 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral2018g00116 5 350 C3H Transcription Factor Family AT2G30580 44.077 6.82e-85 261
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral2018g00116 K16277 - gmx:100783999 642.114