Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral2018g00110 ATGGCGGCCTCTGCCCAGTCTAAGTCCAAGAAATCCGCAGTCGCGAGGAAACCCAAGTCCTCGCCCTCACATCCTCCTTTCGCCGAGATGATCACGGATGCGATCGCAAGTCTGAAAGACAGGACCGGTTCCAGCCAGTACGCCATCACCAAGTTTATCGAGGAGAAGCACAAGCATTTGCCCCCCACTTTTAGGAAGCTGTTGCTGAACAATTTGAAGAAATCTGTGGCCGCTGGCAAGCTTGTCAAGGTCAAGAACTCCTTTAAGCTTCCACCCAAAAAGCCGGCTCCTGCTACCACGAAGCCTACAAAATCAACCGTCAAGGCCGTCCCGAAGTCTCAGCCTAAGCCCTCCGCTAAACCAAAAGCAGCGGCTAAGCCTAAAGCCGTTGCCAAACCTAAACCCAAACCCACTGCTGCAAGAAGTGCGAAAGTGACTTCGAGGCCGGCCAAGACATCGGCCAGGACCTCGCTAGGGAAGAGGGTAGCCAAGGCGGCAAACACTGTGAAGAAGCCCAAGAGCGTGAAATCGCCGGCCAAAAAAGAGGCTGTCAAGAAGGCTAGGAAGTAG 570 0.5404 MAASAQSKSKKSAVARKPKSSPSHPPFAEMITDAIASLKDRTGSSQYAITKFIEEKHKHLPPTFRKLLLNNLKKSVAAGKLVKVKNSFKLPPKKPAPATTKPTKSTVKAVPKSQPKPSAKPKAAAKPKAVAKPKPKPTAARSAKVTSRPAKTSARTSLGKRVAKAANTVKKPKSVKSPAKKEAVKKARK 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral2018g00110 189 Gene3D - 18 109 IPR036388 -
Pral2018g00110 189 Pfam linker histone H1 and H5 family 24 90 IPR005818 GO:0000786|GO:0003677|GO:0006334
Pral2018g00110 189 SUPERFAMILY "Winged helix" DNA-binding domain 20 102 IPR036390 -
Pral2018g00110 189 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 23 92 IPR005818 GO:0000786|GO:0003677|GO:0006334
Pral2018g00110 189 SMART h15plus2 21 87 IPR005818 GO:0000786|GO:0003677|GO:0006334
Pral2018g00110 189 MobiDBLite consensus disorder prediction 1 28 - -
Pral2018g00110 189 CDD H15 21 102 IPR005818 GO:0000786|GO:0003677|GO:0006334
Pral2018g00110 189 PRINTS Histone H5 signature 116 130 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Pral2018g00110 189 PRINTS Histone H5 signature 37 54 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Pral2018g00110 189 PRINTS Histone H5 signature 10 31 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Pral2018g00110 189 PRINTS Histone H5 signature 177 189 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Pral2018g00110 189 PRINTS Histone H5 signature 155 172 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Pral2018g00110 189 PANTHER HISTONE H1 6 183 - -
Pral2018g00110 189 MobiDBLite consensus disorder prediction 87 189 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral2018g00110 Pral-Chr2018 532021 532886 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral2018g00110 30 95 Single Myb Histone (SMH) Gene Family AT1G49950 40.909 8.28e-10 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral2018g00110 K11275 - cave:132170628 130.568