Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral2018g00094 ATGATTCTGCATCTCCACCTGCAGGGAACTCCAGTGAATATCATTGTAGGTTCTCATGTCTGGATTGAGGATCCAGATGTTGCTTGGATTGATGGGCAGGTATCAAAAATCTATGGAAAGGATGCCGAGATTGAAACTACCAATGGGAAAAAGGTTTCTGCAAAATTATCAAAAATATATCCCAAAGATATGGAAGCTCCAGCCGGTGGAGTGGATGATATGACAAAGCTGTCTTATTTGCACGAGCCTGGGGTCTTGCAGAACCTAAAATCTAGATATGAATTGAATGAAATATACACTTATACTGGAAATATTCTTATTGCCATAAATCCATTCCAAAGACTTCCTCATCTTTATGACCCTCACATGATGCAACAGTACAAGGGAGCACCATTTGGAGAACTAAGCCCTCATGTATTTGCAGTAGCTGATGTTGCATATAGGGCAATGATTAATGAAGGAAAAAGTAATTCGATTTTGGTCAGCGGGGAAAGTGGAGCTGGTAAAACTGAAACTACAAAAATGCTTATGCGTTATTTAGCTTTCTTAGGTGGTAGGGCTGCTACTGAAGGACGAACGGTTGAACAACAAGTTCTTGAATCAAATCCGGTTCTTGAAGCATTTGGCAATGCAAAAACTGTTAGGAATAACAATTCGAGTCGATTTGGTAAATTTGTTGAGATCCAATTTGATAAGAGTGGAAGAATCTCAGGAGCAGCCATTCGAACTTACCTTCTGGAGAGGTCTAGGGTCTGCCAAATTAATGATCCTGAACGCAACTACCACTGCTTTTATCTCCTTTGTGCTGCACCACAGGAGGAAATTGAGAAATACAAATTAGATAATCCTAGATCATTTCACTACCTGAACCAATCAAGTTTTTATGAACTGGCTGATGTAAGTGATGCTCGTGAGTATCTTGCTACCCGGAGAGCTATGGATATTGTTGGAATAAGCCAAAAGGACCAGGAAGCAATTTTCCGAGTGGTTGCTGCAATTCTTCATCTTGGCAATATTGATTTTTCCAAAGGAAAGGAGGTTGACTCATCAGTTCCAAAGGATGACAAAGCGAAATTCCACTTGAAAACAACTGCAGAGCTTCTCATGTGTGACGCTGATGCCTTGCAAGATGCATTGTGCAAACGTGTCATGGTCACCCCTGAGGAAGTTATAAAGCGGAGCCTCGACCCCCAAAGTGCCGCAATCAGTAGAGATGGCTTGGCAAAAACAATTTATTCTCGGCTATTTGACTGGTTGGTGGACAAGATTAATAATTCAATCGGACAAGATCCAAATTCCAAATGTTTGATTGGGGTCCTCGATATCTATGGTTTTGAAAGCTTTAAAACTAATAGTTTTGAGCAGTTCTGCATCAATTTCACAAATGAGAAGTTGCAGCAACATTTCAATCAGCACGTGTTTAAAATGGAACAAGAAGAATATACAAAGGAGCAGATTGATTGGAGCTACATTGAATTTGTTGATAATAAAGATGTTTTAGACCTTATTGAAAAGAAACCCGGAGGAATTGTCGCTCTCCTTGATGAAGCCTGCATGTTTCCCAAGTCAACACATGAAACATTTGCAAATAAGCTTTATCAAACATTTAAGACTCACAAGCGTTTTATAAAGCCCAAATTGTCTCGAACAGATTTTACCGTTGCTCATTATGCCGGGGAGGTCTTATACCAGTCTGACCAGTTTTTAGATAAAAATAAAGATTATGTGGTTCCTGAACATCAAGATTTGTTGGGCGCTTCCAAATGCCCTTTCGTAGCAGGTCTTTTTCCTCCTCTTCCAGAAGAGACATCTAAATCATCGAAGTTTTCTTCCATAGCTTCTCGTTTTAAGCTACAACTACAGCAACTAATGGACACATTGAACTCGACAGAACCTCATTATGTAAGATGTATAAAGCCAAACAATGTCCTTAAGCCTGCAATATTTGAGAACGTCAACATTATGCAACAACTTCGCTGTGGTGGTGTTCTAGAGGCAATCAGAATTAGTTGCGCTGGTTACCCTACTCGCCGTCTTTTCTTTGAATTTGCTCACAGATTTGGAATCCTTGCCCCAGAGGTTGTGGATGGAAACTCTGATGAAAAGGTCGTTTGCCAAAAGATTTTAGAGAAAGTGGGTCTTAAAGGATATCAGATTGGGAAAACGAAGATATTCCTGAGAGCAGGTCAGATGGCTGAACTAGACGCACGGAGGGCTCAGGTACTCAGTCGGGCAGCCAAAATTGTCCAACGGCGCATACGAACCCATCAAGCTCGTAATCATTATCTTGCATTACGTAGAACTACCGTATTCATGCAGTCTTTATGTAGAGGAAGACTGGCATGCAAACAATATGATAACATGAGAAGGGAGGCCGCTGCAAAGAAAATTCAGAAAGACGTGCGCAGATATACAGCTAGGAAAGCCTATAAAAGACTCCAAGCTTCAGTACTTATCTTGCAAACAGGTTTAAGGACAATGGGTGCTCGTAACCAATTCAGATTTAGGAAGCGTACTAAAGCTGCAGTCACTATTCAGGCTTGGTGGAGATGCCGGAAGGCCACTTTGTATTACAAGAGGCTCAAGAAAAGTACTATTGTTGCACAATGCAGATGGAGGGGGCGATTGGCCAGGAGAGAACTTAGGAAACTCAAAATGGCTGCAAGAGAAACTGGTGCGCTTAAAGAAGCAAAGGATAAGCTGGAAAAACGAGTGGAGGAACTTACTTGGCGTCTGCAATTAGAAAAAAGTTTAAGGACTAACCTAGAAGAAGCCAAAGCACAAGAAGTAGCAAAACTGCAGAACTCACTGCAGGAGATGCAGAACAAGATTGATGAAACCAATGCTTTACTTGTTAAGGAGCGGGAGAATGCAAAGAAAGTTGTTGAAGAAGCACCTCCTGTTGTTAAAGAAACACAAGTTCTAGTGGAAGACACACAAAAGGTTGAGTCACTAGTGGGGGAAGTTGAGAGTCTGAAGACATCATTAGAGTCAGAGAAACAAAAAGCTGAAGATTTTGAAAGAAAATACAATGAATCTCAAGCTTTTAGTGAAGAACAAGGCAAAAAATTAGAGGACACAGAGAAGAAGGTTCGTCAACTACAGGAATCGTTAACCAGGCTGGAAGAGAAAATTACTAATTTAGAATCAGAGAATCGGGTTCTACGTCAGCAAGCAGTATCCATGACACCAAATAAGTTTCTTTCAGGACGCTCTAGATCTATTATACAGAGAGGCGCTGAAAGTGGTCATATAGTCGGAGAAGCGAAGATACCCTTGGATCTTCATAGCTCATCAATTAACCAGAGGGAACATGCTGAAGTAGATGACAGACCACAAAAGTCACTAAATGAGAAACAGCAGGAAAATCAAGACTTGCTCATCAGATGTATTGCGCAACATGTAGGCTTTGCAGGGAACAGACCTGTTGCTGCATGTATCATATATAAATGTCTCTTACATTGGAGGTCATTTGAAGTAGAGCGCACTAGTGTTTTTGATCGTATTATTCAAACTATTGGCAATGCAATTGAGACCCAGGACAACAATGATGTCTTGGCTTATTGGTTATCCAATGCATCCACGCTTCTATTGTTACTCCAGCGCACACTTAAGGCTAGTGGTGCTGCTGGCATGGCCCCACAACGCCGTCGTTCTTCATCCGCAACCCTATTTGGGAGAATGACACAGAGTTTCCGTGGAGCCCCTACAGGAGTTAACCTCTCCTTAATCAATGGTAGCATAAGTGGTGGAGTAGACACATTGCGTCAAGTTGAAGCCAAGTACCCAGCTTTGCTTTTCAAACAGCAGCTTACTGCATATGTAGAAAAAATATATGGAATGATTCGGGATAATCTAAAGAAAGAAATTTCTCCCCTGCTAGGGTTGTGCATCCAGGCACCAAGAACATCCAGAGCATGCTTGGTTAAGGGATCACTAACAGTTGCAAATACTGAAGCTCAGCGAGCTTTGATTGCTCACTGGCAGGGGATAGTTACGAGCCTTGGGAACTTTTTGAACACTTTGAGGGCAAATCATGTTCCCCCATTTTTAGTTCGTAAGGTGTTTACTCAAATTTTTTCTTTCATCAATGTTCAACTATTCAATAGTCTCCTTTTAAGAAGAGAGTGCTGCTCATTTAGTAATGGAGAATATGTCAAAGCTGGGTTGGCTGAATTGGAGCACTGGTGTTATAAGGCGACAGATGAGTATGCAGGTTCAGCGTGGGATGAGTTGAAACATATCAGACAGGCGATTGGATTTCTGGTCATACACCAGAAACCTAAGAAAACACTGGATGAAATAAGCCATGACCTTTGCCCGGTCCTCAGCATCCAGCAGTTATATCGGATTAGCACAATGTACTGGGATGACAAGTATGGTACACACAGCGTGTCACCTGATGTTATCTCCAATATGAGAGTGTTGATGACCGAAGATTCAACTAACGCAGTTAGTAGTTCTTTCCTGCTGGATGATGATTCAAGCATTCCATTTTCGGTTGATGATATGTCAAAGTCGATGGAACAGATAGATATCTCCGACGTGGAGGCCCCACCGCTTATTCGTGAGAACTCTGGCTTTAGTTTCTTGCTGCCAAGCCCAACTTGA 4611 0.4164 MILHLHLQGTPVNIIVGSHVWIEDPDVAWIDGQVSKIYGKDAEIETTNGKKVSAKLSKIYPKDMEAPAGGVDDMTKLSYLHEPGVLQNLKSRYELNEIYTYTGNILIAINPFQRLPHLYDPHMMQQYKGAPFGELSPHVFAVADVAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYLAFLGGRAATEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDKSGRISGAAIRTYLLERSRVCQINDPERNYHCFYLLCAAPQEEIEKYKLDNPRSFHYLNQSSFYELADVSDAREYLATRRAMDIVGISQKDQEAIFRVVAAILHLGNIDFSKGKEVDSSVPKDDKAKFHLKTTAELLMCDADALQDALCKRVMVTPEEVIKRSLDPQSAAISRDGLAKTIYSRLFDWLVDKINNSIGQDPNSKCLIGVLDIYGFESFKTNSFEQFCINFTNEKLQQHFNQHVFKMEQEEYTKEQIDWSYIEFVDNKDVLDLIEKKPGGIVALLDEACMFPKSTHETFANKLYQTFKTHKRFIKPKLSRTDFTVAHYAGEVLYQSDQFLDKNKDYVVPEHQDLLGASKCPFVAGLFPPLPEETSKSSKFSSIASRFKLQLQQLMDTLNSTEPHYVRCIKPNNVLKPAIFENVNIMQQLRCGGVLEAIRISCAGYPTRRLFFEFAHRFGILAPEVVDGNSDEKVVCQKILEKVGLKGYQIGKTKIFLRAGQMAELDARRAQVLSRAAKIVQRRIRTHQARNHYLALRRTTVFMQSLCRGRLACKQYDNMRREAAAKKIQKDVRRYTARKAYKRLQASVLILQTGLRTMGARNQFRFRKRTKAAVTIQAWWRCRKATLYYKRLKKSTIVAQCRWRGRLARRELRKLKMAARETGALKEAKDKLEKRVEELTWRLQLEKSLRTNLEEAKAQEVAKLQNSLQEMQNKIDETNALLVKERENAKKVVEEAPPVVKETQVLVEDTQKVESLVGEVESLKTSLESEKQKAEDFERKYNESQAFSEEQGKKLEDTEKKVRQLQESLTRLEEKITNLESENRVLRQQAVSMTPNKFLSGRSRSIIQRGAESGHIVGEAKIPLDLHSSSINQREHAEVDDRPQKSLNEKQQENQDLLIRCIAQHVGFAGNRPVAACIIYKCLLHWRSFEVERTSVFDRIIQTIGNAIETQDNNDVLAYWLSNASTLLLLLQRTLKASGAAGMAPQRRRSSSATLFGRMTQSFRGAPTGVNLSLINGSISGGVDTLRQVEAKYPALLFKQQLTAYVEKIYGMIRDNLKKEISPLLGLCIQAPRTSRACLVKGSLTVANTEAQRALIAHWQGIVTSLGNFLNTLRANHVPPFLVRKVFTQIFSFINVQLFNSLLLRRECCSFSNGEYVKAGLAELEHWCYKATDEYAGSAWDELKHIRQAIGFLVIHQKPKKTLDEISHDLCPVLSIQQLYRISTMYWDDKYGTHSVSPDVISNMRVLMTEDSTNAVSSSFLLDDDSSIPFSVDDMSKSMEQIDISDVEAPPLIRENSGFSFLLPSPT 1536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral2018g00094 1536 SMART MYSc_2a 64 740 IPR001609 GO:0003774|GO:0005524|GO:0016459
Pral2018g00094 1536 ProSiteProfiles Myosin N-terminal SH3-like domain profile. 15 64 IPR004009 GO:0003774|GO:0005524|GO:0016459
Pral2018g00094 1536 FunFam Class V myosin 446 581 - -
Pral2018g00094 1536 Pfam IQ calmodulin-binding motif 863 882 IPR000048 GO:0005515
Pral2018g00094 1536 Pfam IQ calmodulin-binding motif 744 762 IPR000048 GO:0005515
Pral2018g00094 1536 Pfam IQ calmodulin-binding motif 839 859 IPR000048 GO:0005515
Pral2018g00094 1536 Pfam IQ calmodulin-binding motif 792 811 IPR000048 GO:0005515
Pral2018g00094 1536 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 792 890 IPR027417 -
Pral2018g00094 1536 Pfam Myosin N-terminal SH3-like domain 16 58 IPR004009 GO:0003774|GO:0005524|GO:0016459
Pral2018g00094 1536 Gene3D - 793 839 - -
Pral2018g00094 1536 Gene3D - 741 792 - -
Pral2018g00094 1536 Gene3D - 840 889 - -
Pral2018g00094 1536 ProSiteProfiles IQ motif profile. 742 769 IPR000048 GO:0005515
Pral2018g00094 1536 FunFam unconventional myosin-Va 744 792 - -
Pral2018g00094 1536 CDD MYSc_Myo11 83 727 IPR036018 -
Pral2018g00094 1536 ProSiteProfiles IQ motif profile. 861 890 IPR000048 GO:0005515
Pral2018g00094 1536 Gene3D Kinesin motor domain 72 669 IPR036961 -
Pral2018g00094 1536 ProSiteProfiles IQ motif profile. 838 865 IPR000048 GO:0005515
Pral2018g00094 1536 CDD MyosinXI_CBD 1118 1502 IPR037975 GO:0007015
Pral2018g00094 1536 ProSiteProfiles IQ motif profile. 790 817 IPR000048 GO:0005515
Pral2018g00094 1536 PANTHER MYOSIN 61 1467 - -
Pral2018g00094 1536 FunFam unconventional myosin-Va 793 840 - -
Pral2018g00094 1536 Gene3D Myosin VI head, motor domain, U50 subdomain 319 608 - -
Pral2018g00094 1536 PRINTS Myosin heavy chain signature 203 230 IPR001609 GO:0003774|GO:0005524|GO:0016459
Pral2018g00094 1536 PRINTS Myosin heavy chain signature 489 517 IPR001609 GO:0003774|GO:0005524|GO:0016459
Pral2018g00094 1536 PRINTS Myosin heavy chain signature 99 118 IPR001609 GO:0003774|GO:0005524|GO:0016459
Pral2018g00094 1536 PRINTS Myosin heavy chain signature 156 181 IPR001609 GO:0003774|GO:0005524|GO:0016459
Pral2018g00094 1536 PRINTS Myosin heavy chain signature 436 464 IPR001609 GO:0003774|GO:0005524|GO:0016459
Pral2018g00094 1536 ProSiteProfiles IQ motif profile. 765 794 IPR000048 GO:0005515
Pral2018g00094 1536 SMART iq_5 741 763 IPR000048 GO:0005515
Pral2018g00094 1536 SMART iq_5 764 786 IPR000048 GO:0005515
Pral2018g00094 1536 SMART iq_5 812 834 IPR000048 GO:0005515
Pral2018g00094 1536 SMART iq_5 837 859 IPR000048 GO:0005515
Pral2018g00094 1536 SMART iq_5 860 882 IPR000048 GO:0005515
Pral2018g00094 1536 SMART iq_5 789 811 IPR000048 GO:0005515
Pral2018g00094 1536 FunFam Myosin heavy chain 259 314 - -
Pral2018g00094 1536 Pfam Myosin head (motor domain) 71 727 IPR001609 GO:0003774|GO:0005524|GO:0016459
Pral2018g00094 1536 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 42 792 IPR027417 -
Pral2018g00094 1536 Pfam DIL domain 1355 1458 IPR002710 -
Pral2018g00094 1536 Gene3D - 446 630 - -
Pral2018g00094 1536 ProSiteProfiles Myosin motor domain profile. 69 739 IPR001609 GO:0003774|GO:0005524|GO:0016459
Pral2018g00094 1536 Gene3D - 674 740 - -
Pral2018g00094 1536 Coils Coil 982 1009 - -
Pral2018g00094 1536 Coils Coil 1017 1058 - -
Pral2018g00094 1536 Coils Coil 884 964 - -
Pral2018g00094 1536 SMART DIL_2 1354 1461 IPR002710 -
Pral2018g00094 1536 FunFam unconventional myosin-Va 841 888 - -
Pral2018g00094 1536 ProSiteProfiles Dilute domain profile. 1167 1479 IPR002710 -
Pral2018g00094 1536 Gene3D - 259 317 - -
Pral2018g00094 1536 FunFam Myosin 2 319 432 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral2018g00094 Pral-Chr2018 469518 480357 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral2018g00094 9 1533 Myosins gene family AT1G54560 83.748 0.0 2697
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral2018g00094 K10357 - gmx:100816792 2675.58