Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral2018g00090 ATGCAGCCCTTCTTCTTATTCCACTGTTTCATTGGCCTCTCTCTTGTTTTTGCCGAGGGAGCTCAATCTGCATTTAGTGATGAATTGTCAACACTTCTCTCATTCAAATCCAGTCTCGTTGATCCAATGAAGCATCTGAAGAATTGGCAGCCACCAACCAATCTGAGCCGTAACGGTTCATGGTCACCCCACTGTAATTGGACAGGGGTTTGGTGCAACTCTAAAGGCTTCGTAGAGAGTCTCGACCTCTCCAACATGAACCTTAGTGGTCGTGTTTCAGACCACATCCGAGCACTTTCTAGTCTGTCTGTTTTCAACGTAAGTTGCAACAATTTCGCTTCTTCATTGCCAAAATCACTGTCCAATCTCACTTCCTTGAAGAGCTTTGATGTGAGCCAGAACTACTTCACTGGCAGCTTTCCTACGGGTCTTGGGAATGCCGCAGGATTGAGACTAGTTAACGCGTCAAGTAATAACTTTTTGGGTTTTCTTCCAGAGGATCTTGGAAATGCAACGTTGCTCGAAAGCATTGATTTTCGTGGGGGCTACCTCGAAGGTCCAGTCCCCGTTAGTTTCAGGAATTTACAGAAGCTCAAATTTCTTGGGCTTTCAGGGAATAACTTTACAGGGAGGATTCCAGGAGAACTTGGAGAACTTGCTTCTCTAGAGACACTAATTCTTGGGTACAATGAGTTTGAAGGAGAGGTCCCTTCAGAGTTTGGCAACCTCACCAATCTCCAGTACCTTGATTTGGCTGTGAGTAGTCTCAGTGGACAGATTCCACCACAATTGGGTAAGTTGAAAAGGCTTAATACACTTTTCTTGTACAAGAACAAGTTTGAAGGAAGGATTCCGCCTGAGATTGGCAACATTACGTCATTGGAGTATCTGGACTTGTCCGATAACAAGATTTCAGGGAAGATCCCAGAGGAAATTGCTGAGCTGAAGAACTTGCAGCTATTAAATGTCATGAGAAACAAACTAACAGGTTTGGTACCAGAAAAGCTTGGGGAACTGAAGAAATTAAAAGTACTTGAGCTATGGAAAAATTCTTTACGAGGCCCTTTGCCGGCGAACCTTGGACAGAACTCTCCACTGGAGTGGTTGGATGTGTCTTCTAACTCATTATCAGGAGAAATTCCGCGAGGTTTGTGTGCTTCTGGAAATCTCACCAAACTGATACTTTTCAGTAATTCCTTCTCCGGTTCCATTCCAAGCGGGATCTCAAATTGTTCATCTCTGGCACGTGTTCGCATTCATAACAATCTTATATCTGGGACTATTCCAATTGGTTTCGGAAAACTCCCAAACCTTCAAAGGCTGGAATTGGCCAAGAATAATCTTACCAGCCAAATTCCAATAGATATCACTTCATCCGCTTCACTTTCTTTCATTGATGTATCCTGGAACAACCTTGAATCATCTCTACCTTCTGGAATTCTCTCTATTCCCTCCCTTCAAACCTTCATTGCATCCAACAACAACTTGGGAGGCAATATACCAGGTGAGTTCCAGGATTGCATCTCTCTCTCCGTGCTGGATCTTTCAAACAACCTTATATCTGGAGACATCCCAGAAAGCATTGCTTCTTGCCAAAAACTAGTCCATTTGAGCCTCGGGAACAACCAATTAACTGGGGAAATCCCGAAATCAATTGCAAACATGCCCACCTTAGCCACTCTTGATCTCTCCCACAATGCACTTTACGGCCGGATACCTGAAAACCTTGGCCTCTCCCCAGCTCTTGAAACGATCAACCTATCCTACAACAAGCTCGAGGGTCCAGTGCCCTCCAATGGTATTTTGATGACCATAAATCCTAACGATCTCACAAACAACACCAACCTCTGCGGAGGCATTCTTCCTCCATGTTCTCAGAGATCAATTCAGGGAAGCGAGCGAAGGACCTCGCGCACAAAGCATATTATGGTTGGTTTTATCACAGGAATTTCAGTAATTGTGTCTCTGGGCATTGCATATGTTGGGGGCAGATGGTTGTACAATAAATGGTACTTATACAACAGTTTCGTCCATGATTGGTTCAAAAACAGCAATGAAGAATGGCCTTGGAGATTAGTAGCATTTCAAAGGATGAGTTTCACAAGCAGCGAGATTCTCACATGCATTAAGGAAACAAATATTATAGGCATGGGAGGCACTGGCATTGTGTATAAAGCTGAAATTCATAGACCTCATGTAACAGTAGCAGTGAAGAAACTATGGAGGTCAGGGGCAGACATAGAAGATGGTAATGATGTGTTGAAAGAAGTGAATCTGCTGGGGAGACTGAGGCATAGGAATATTGTGAGGCTGTTGGGGTATGTTCACAACGAAAGGGATGTGATGATGGTGTACGAGTTCATGCCCAATGGGAATCTTGGGACAGCACTACATGGAAAGCAAGGAGAAAGGTTACTGGTAGATTGGGTTTCCAGGTATAACGTAGCAGTTGGAGTTGCACAAGGCCTCCATTACCTCCATCATGATTGTCACCCCACAGTTATTCACAGAGACATCAAGTCCAACAATATACTCCTTGACGCAAATCTGGAGGCGAGGATAGCAGATTTCGGATTAGCAAAAATGCTGATCCACAAGAATGAGACTGTTTCAATGGTGGCGGGATCTTACGGGTACATCGCCCCAGAATATGGATATACTCTGAAAGTGGACGAGAAAATCGACATATACAGTTACGGCGTAGTGCTTCTGGAGCTCATAACAGGGAAAAAGCCTTTAGACGTGTCATTCGAAGACTGTGGAGACATAGTTGCATGGGTAAGAAAGAAAAGAAGCAACGGAGGGTTGGAAGAAGCACTAGATCCCACCATAGCGGGTAGGTGCAGGCATGTCCAAGAAGAGATGCTTCTCGTGCTCCGAATTGCGCTTCTCTGTACGGCAAAGCTTCCGAAGGAAAGACCATCCATGAGGGACATAGTGACCATGCTGGGAGAGGCAAAACCCAGAAGAAAAAGCACCTGTCAAAATGGAACACACGAAGAAACCAAGGAAAAGCCAATCTTCACCTCCTCTCCCATCATAAGCCTTCTCTAG 3054 0.446 MQPFFLFHCFIGLSLVFAEGAQSAFSDELSTLLSFKSSLVDPMKHLKNWQPPTNLSRNGSWSPHCNWTGVWCNSKGFVESLDLSNMNLSGRVSDHIRALSSLSVFNVSCNNFASSLPKSLSNLTSLKSFDVSQNYFTGSFPTGLGNAAGLRLVNASSNNFLGFLPEDLGNATLLESIDFRGGYLEGPVPVSFRNLQKLKFLGLSGNNFTGRIPGELGELASLETLILGYNEFEGEVPSEFGNLTNLQYLDLAVSSLSGQIPPQLGKLKRLNTLFLYKNKFEGRIPPEIGNITSLEYLDLSDNKISGKIPEEIAELKNLQLLNVMRNKLTGLVPEKLGELKKLKVLELWKNSLRGPLPANLGQNSPLEWLDVSSNSLSGEIPRGLCASGNLTKLILFSNSFSGSIPSGISNCSSLARVRIHNNLISGTIPIGFGKLPNLQRLELAKNNLTSQIPIDITSSASLSFIDVSWNNLESSLPSGILSIPSLQTFIASNNNLGGNIPGEFQDCISLSVLDLSNNLISGDIPESIASCQKLVHLSLGNNQLTGEIPKSIANMPTLATLDLSHNALYGRIPENLGLSPALETINLSYNKLEGPVPSNGILMTINPNDLTNNTNLCGGILPPCSQRSIQGSERRTSRTKHIMVGFITGISVIVSLGIAYVGGRWLYNKWYLYNSFVHDWFKNSNEEWPWRLVAFQRMSFTSSEILTCIKETNIIGMGGTGIVYKAEIHRPHVTVAVKKLWRSGADIEDGNDVLKEVNLLGRLRHRNIVRLLGYVHNERDVMMVYEFMPNGNLGTALHGKQGERLLVDWVSRYNVAVGVAQGLHYLHHDCHPTVIHRDIKSNNILLDANLEARIADFGLAKMLIHKNETVSMVAGSYGYIAPEYGYTLKVDEKIDIYSYGVVLLELITGKKPLDVSFEDCGDIVAWVRKKRSNGGLEEALDPTIAGRCRHVQEEMLLVLRIALLCTAKLPKERPSMRDIVTMLGEAKPRRKSTCQNGTHEETKEKPIFTSSPIISLL 1017
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral2018g00090 1017 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 381 628 - -
Pral2018g00090 1017 MobiDBLite consensus disorder prediction 990 1017 - -
Pral2018g00090 1017 Pfam Protein kinase domain 711 916 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral2018g00090 1017 ProSitePatterns Serine/Threonine protein kinases active-site signature. 834 846 IPR008271 GO:0004672|GO:0006468
Pral2018g00090 1017 SMART LRR_typ_2 243 267 IPR003591 -
Pral2018g00090 1017 SMART LRR_typ_2 555 579 IPR003591 -
Pral2018g00090 1017 SMART LRR_typ_2 291 315 IPR003591 -
Pral2018g00090 1017 SMART LRR_typ_2 339 363 IPR003591 -
Pral2018g00090 1017 SMART LRR_typ_2 195 219 IPR003591 -
Pral2018g00090 1017 SMART LRR_typ_2 435 459 IPR003591 -
Pral2018g00090 1017 SMART LRR_typ_2 99 123 IPR003591 -
Pral2018g00090 1017 Gene3D Phosphorylase Kinase; domain 1 708 791 - -
Pral2018g00090 1017 ProSitePatterns Protein kinases ATP-binding region signature. 715 739 IPR017441 GO:0005524
Pral2018g00090 1017 Gene3D Ribonuclease Inhibitor 27 149 IPR032675 -
Pral2018g00090 1017 FunFam MDIS1-interacting receptor like kinase 1 792 1002 - -
Pral2018g00090 1017 SUPERFAMILY L domain-like 60 310 - -
Pral2018g00090 1017 Gene3D Transferase(Phosphotransferase) domain 1 792 1009 - -
Pral2018g00090 1017 FunFam Leucine-rich repeat receptor-like protein kinase PXL1 25 182 - -
Pral2018g00090 1017 ProSiteProfiles Leucine-rich repeat profile. 293 315 IPR001611 GO:0005515
Pral2018g00090 1017 SMART serkin_6 709 983 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral2018g00090 1017 FunFam Leucine-rich repeat receptor-like protein kinase PXL1 286 380 - -
Pral2018g00090 1017 SUPERFAMILY Protein kinase-like (PK-like) 701 983 IPR011009 -
Pral2018g00090 1017 Pfam Leucine rich repeat N-terminal domain 27 73 IPR013210 -
Pral2018g00090 1017 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 239 984 - -
Pral2018g00090 1017 PRINTS Leucine-rich repeat signature 555 568 - -
Pral2018g00090 1017 PRINTS Leucine-rich repeat signature 294 307 - -
Pral2018g00090 1017 FunFam Leucine-rich repeat receptor-like protein kinase PXL1 183 283 - -
Pral2018g00090 1017 Pfam Leucine rich repeat 269 328 IPR001611 GO:0005515
Pral2018g00090 1017 Pfam Leucine rich repeat 484 544 IPR001611 GO:0005515
Pral2018g00090 1017 Pfam Leucine rich repeat 413 472 IPR001611 GO:0005515
Pral2018g00090 1017 ProSiteProfiles Protein kinase domain profile. 709 990 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral2018g00090 1017 Gene3D Ribonuclease Inhibitor 335 631 IPR032675 -
Pral2018g00090 1017 SUPERFAMILY RNI-like 256 617 - -
Pral2018g00090 1017 ProSiteProfiles Leucine-rich repeat profile. 509 531 IPR001611 GO:0005515
Pral2018g00090 1017 MobiDBLite consensus disorder prediction 992 1006 - -
Pral2018g00090 1017 FunFam MDIS1-interacting receptor like kinase 1 709 791 - -
Pral2018g00090 1017 Gene3D Ribonuclease Inhibitor 150 239 IPR032675 -
Pral2018g00090 1017 Gene3D Ribonuclease Inhibitor 240 334 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral2018g00090 Pral-Chr2018 448361 451985 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral2018g00090 4 1017 Receptor kinase-like Gene Family AT1G08590 63.046 0.0 1262
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Pral2018g00090 Pkinase 5.3e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral2018g00090 - - gmx:100793873 1572.37