Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral2018g00087 ATGACTACTCTTAAAGAAGAGTGGGAAGCTGTTCTGGATGACCTTGAGACTGAAAGTGCCTATTTGCTGGAACAACTTGATATGGCTGGTGTGGAGCTGCCAAGGCTTTATAAGTGGATAGAGAGGGAGGCTCCCAGTGGTTGTTTGACAGAAGCTTGGAAAAAGAGGAATCATTGGGTAGGTACTCAGGCAACTGAAGAATTTGCTGAGTCAGTTGCTGATGCTGAGAAGCATCTAGAAGTCTACAGACCTGTTAGAAGACGACATGGCAAACTGTTGGAAGAGGGTGCCAGTGGATTTCTTAAAAAAAAACTTGATGAATCCATTGAACCGGTAAAGGAAAAAACTGATGTGGATTGGGGTATGTTTAACAAAATATTTCACGATGGTGGTGATGCTGATGCTTCATTTGGCTGTAAGAATTGGGCTTCTGTTTATTTGGCCAGCACTCCGCAACAAGCTGCACTGATGGGCCTTGAATTTCCTGGTGTCAACGAGGTGGAGGAGATTGATGACATTGATGGCACTTCTACTGATCCATTTATTGCAGCTGCAATTGCAAATGAAAAGGAACTAGAACTTTCTGATGAACAGAAGAGAAAGTTTAAAAAGGTCAAAGAAGAAGATGATGTAATTGTTGATCGGAAGCTTCAAATCCATTTAAAACGAAGGAGGTATCGGAAGAATAAAAAACAGAGGGAAACCATAGAGAGTCTCAAGGAAGAAACTTGTGATGATAGTGAAAAGGTGGCTAACAATGAAGTTGAATGTCTGAATATGAAGAATGATAATATTGAAGATCTGGGTGGCATTTATGACCTTGACAAAGTGAAGCCTATGAATATTGGCCCTTTGTCAGAGCTCTCTAAATCTTCATTGCCTGATGTTGAACAAAGAGGTACCAAGCGACTAAATGATGGTGAAGAGTATAGTGATACGAAAAAGGGTCGGACTGTCACTATTAACAGTGGTGATGAAGCTGATGCAGTTGAAAATAATATAGTTAGGGATACAAATGCATTAGATAATCAGTCTGAGATGCAAGGCACTTGTGCTAGCATTGCTGATAGTCTTCCTTCACAGCACCTGGACAAGAAGTTTTGCTGCACTGTTTGTGATAAAGTGGCTCTTGAAGTTCACCAACATCCTCTTTTGGAAGTTATTATTTGCTGGGATTGCAATTCTTTAATGGAAGAAAAGAAACGTGTGAAGGATCTCAATCCTGATTGCTCCGAGTGTTATTGTGCATGGTGTGGGGGAAGCAATGAATTAGTTAGCTGCAAGTCATGCAAAGTGTTGTTCTGCAACAATTGCATAAGGAAGAATCTTGGTGCAGAATTCCTTTCTGAAGTTCAGGCCACTGGTTGGCATTGTTATTGCTGCCACCCAAATCTCTTGCAAAGACTATCATCACAACTAGAGAAAGCTATGGGATCTGTTGAAACATCAGTTTCCAGCTCTAGTAGTGATTCGGATAATTCACATGCAGAGACTAATGTTACAATCAGTTCTAAGCGAAAGCGCAAAAAGAAGATTAGGAGGATCCTTGATGATGCTGAATTAGGAGAGGAAACAAAAAGGAAAATTGCGATAGAAAAGGAGCGTCAGGAACGTTTGGAGTCTTTGCGAGTGCAGTTTTCTGCCTCATCTAACATCATGGGCTCTTCTGGGTATAAGGGGAATTTATCAGAAGGTGCAAGTTCTGAAGTCCTTGGTGACGCATTAACAGGCTATGTAGTAAATGTTGTGAGGGAAAAAGGTGAAGAAGCTGTCAGAATTCCTCCTAGTATATCAGCTAAACTGAAAACTCATCAGATTGCAGGAATAAGATTTATGTGGGAGAATATAATACAGTCAATCAGAAAAGTCAAGTCCGGGGATAAAGGTCTTGGTTGTATCCTCGCTCATACAATGGGCCTTGGTAAAACCTTTCAGGTGATAGCTTTCTTGTACACAGCAATGAGAACCACTGACCTGGGGTTAAGAACTGCACTTATTGTCACGCCAGTCAATGTGCTGCACAATTGGCGGCAGGAGTTTATCAAATGGAGGCCATCAGAACTAAAACCACTCAGGGTCTTCATGCTGGAAGATGTATCAAGGGATAGGAGAGCAGAAATACTTGCAAAATGGAGAAACAAAGGTGGCATATTTCTGATTGGCTATACTGCTTTTCGAAATTTATCTTTTGGAAAGCATGTGAGAGATCGACACACAGCTCGAGAAATTTGCCGTGCTTTGCAGGATGGACCAGACATACTTGTTTGTGATGAAGCGCATATGATAAAGAATATAAAGGCTGGCATAACTCAAGCCTTGAAACAGGTAAAATGCCATAGGAGAATTGCCCTGACTGGATCACCTCTTCAGAACAATCTCATGGAGTATTATTGTATGGTTGATTTTGTAAGAGAAGGTTTTCTTGGAAGCAGTCATGAATTTAGGAATCGCTTCCAAAATCCTATAGAGAATGGTCAACATACTAATTCTACACTGGATGATGTGAAGATTATGAACCAAAGGTCTCACATCCTCTATGAACAATTAAAAGGCTTTGTTCAACGAATGGACATGAGTGTGGTGAAGAATGATTTGCCTCCAAAAACTGTCTTTGTGATAAGCGTCAAGCTTTCTCCTCTGCAGAGAAAACTGTACAAGAGATTTCTCGATGTGCATGGATTCACAAATGACCGGGCTTCTAATGAAAAAATGAGAAAGAGATGTTTTTTTGTTGGGTACCAGGCGTTAGCTCAGATATGGAACCATCCCGGGATCTTGCAATTGACAAAAGAAGACAAGGATTATGTTAGACAAGAAGATGCTGTTGAGAATTTTCTTGTGGATGACAGCTCTAGTGACGAAAATTCTGACTATAGCGTGCCTGTTGGAGGAGAGAAGGTTGGATGTGCAAATGAGTTTCTGCGGAGGAAAGATGAGAATGGCTTTTTTCTAAAGGGTTGGTGGAACGATCTTCTGCATGAGAAAAATTATAAAGAACTTGATTACAGTGGCAAAATGGTTTTGCTTCTGGACATACTAACCATGAGTTCTGATGTGGGTGACAAGGTGTTGGTTTTCAGCCAGAGCATACCAACACTAGACCTCATAGAACTTTATCTATCAAGATTACTTCGACGAGGCAAACATGGCAAATTTTGGAAGAAGGGAAAAGACTGGTATAGGCTGGATGGAAGGACTGAGAGCTCTGAAAGGCAGAAGCTGGTTGAGAGGTTTAATGAGCCTTCCAATAATAGAGTGAAGTGCTCCCTTATTTCAACAAGGGCTGGTTCTTTGGGTATTAATCTCCATGCAGCTAATCGTGTTGTTATAGTTGATGGTTCTTGGAATCCAACATACGATCTCCAGGCCATCTATCGAGCTTGGAGGTATGGCCAGAGAAAGCCTGTGTTTGCTTACCGATTGCTGGCTCATGGAACTATGGAAGAGAAAATATATAAGCGCCAGGTAACAAAGGAGGGGCTTGCTGCTAGAGTGGTTGACAGACAGCAAGTGTACAGGACTATATCTAAAGAAGAGATGTTACATCTCTTTGAGTTTGGTGATGATGAAAACCCTGAGACGTTGGCTGAACTGAGCCAAGAGAATGGGCATTCATTGGAACAAACGATCCCACATTCAAATGGAACCAGCCATTCCGATAAGCTAATGGAAAGCTTACTTAGCAAGCATCATCCCAAGTGGATTGCCAATTATCATGAACACGAAACCTTGTTGCAAGAAAATGAAGAAGAAAAGCTATCAAAAGAGGAGCAAGACATGGCTTGGGAAGTATACCGGAAAACGTTAGAATGGGAGGAAGTGCAGAGAGTACCACTGGGTGAATCTCTGCCTGTTCAAAAGCCCCAAGAGCCGAATAATGCACCCCCTGCATCAAAATCCCGCAGCCTTTCACCAACAAGGGTGAGGAGCCGTTTTGTGACCCGCAAATGCACCAACCTTTCACACTTGCTGACGCTTAGAAGTCAAGGCACTAAATTTGGTTGCAGTACGGTCTGTGGGGAATGCGCCCAAGAGATCAGATGGGAGGACTTGAAGTACAGAGATGGAAGAGCAATAAGGTGA 4083 0.4195 MTTLKEEWEAVLDDLETESAYLLEQLDMAGVELPRLYKWIEREAPSGCLTEAWKKRNHWVGTQATEEFAESVADAEKHLEVYRPVRRRHGKLLEEGASGFLKKKLDESIEPVKEKTDVDWGMFNKIFHDGGDADASFGCKNWASVYLASTPQQAALMGLEFPGVNEVEEIDDIDGTSTDPFIAAAIANEKELELSDEQKRKFKKVKEEDDVIVDRKLQIHLKRRRYRKNKKQRETIESLKEETCDDSEKVANNEVECLNMKNDNIEDLGGIYDLDKVKPMNIGPLSELSKSSLPDVEQRGTKRLNDGEEYSDTKKGRTVTINSGDEADAVENNIVRDTNALDNQSEMQGTCASIADSLPSQHLDKKFCCTVCDKVALEVHQHPLLEVIICWDCNSLMEEKKRVKDLNPDCSECYCAWCGGSNELVSCKSCKVLFCNNCIRKNLGAEFLSEVQATGWHCYCCHPNLLQRLSSQLEKAMGSVETSVSSSSSDSDNSHAETNVTISSKRKRKKKIRRILDDAELGEETKRKIAIEKERQERLESLRVQFSASSNIMGSSGYKGNLSEGASSEVLGDALTGYVVNVVREKGEEAVRIPPSISAKLKTHQIAGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRTTDLGLRTALIVTPVNVLHNWRQEFIKWRPSELKPLRVFMLEDVSRDRRAEILAKWRNKGGIFLIGYTAFRNLSFGKHVRDRHTAREICRALQDGPDILVCDEAHMIKNIKAGITQALKQVKCHRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRFQNPIENGQHTNSTLDDVKIMNQRSHILYEQLKGFVQRMDMSVVKNDLPPKTVFVISVKLSPLQRKLYKRFLDVHGFTNDRASNEKMRKRCFFVGYQALAQIWNHPGILQLTKEDKDYVRQEDAVENFLVDDSSSDENSDYSVPVGGEKVGCANEFLRRKDENGFFLKGWWNDLLHEKNYKELDYSGKMVLLLDILTMSSDVGDKVLVFSQSIPTLDLIELYLSRLLRRGKHGKFWKKGKDWYRLDGRTESSERQKLVERFNEPSNNRVKCSLISTRAGSLGINLHAANRVVIVDGSWNPTYDLQAIYRAWRYGQRKPVFAYRLLAHGTMEEKIYKRQVTKEGLAARVVDRQQVYRTISKEEMLHLFEFGDDENPETLAELSQENGHSLEQTIPHSNGTSHSDKLMESLLSKHHPKWIANYHEHETLLQENEEEKLSKEEQDMAWEVYRKTLEWEEVQRVPLGESLPVQKPQEPNNAPPASKSRSLSPTRVRSRFVTRKCTNLSHLLTLRSQGTKFGCSTVCGECAQEIRWEDLKYRDGRAIR 1360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral2018g00087 1360 MobiDBLite consensus disorder prediction 296 311 - -
Pral2018g00087 1360 CDD SF2_C_SNF 999 1142 - -
Pral2018g00087 1360 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1011 1179 IPR001650 -
Pral2018g00087 1360 Coils Coil 5 25 - -
Pral2018g00087 1360 Coils Coil 222 242 - -
Pral2018g00087 1360 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 623 806 IPR014001 -
Pral2018g00087 1360 SMART ultradead3 597 818 IPR014001 -
Pral2018g00087 1360 PANTHER RAD54-LIKE 1 1352 IPR044574 GO:0016887
Pral2018g00087 1360 SMART helicmild6 1034 1131 IPR001650 -
Pral2018g00087 1360 CDD ADDz_ATRX 365 463 - -
Pral2018g00087 1360 MobiDBLite consensus disorder prediction 285 311 - -
Pral2018g00087 1360 Coils Coil 1238 1258 - -
Pral2018g00087 1360 Gene3D - 574 855 IPR038718 -
Pral2018g00087 1360 Pfam Helicase conserved C-terminal domain 1007 1131 IPR001650 -
Pral2018g00087 1360 MobiDBLite consensus disorder prediction 1197 1219 - -
Pral2018g00087 1360 MobiDBLite consensus disorder prediction 480 505 - -
Pral2018g00087 1360 MobiDBLite consensus disorder prediction 480 500 - -
Pral2018g00087 1360 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 861 1205 IPR027417 -
Pral2018g00087 1360 ProSiteProfiles ADD domain profile. 357 489 IPR025766 -
Pral2018g00087 1360 MobiDBLite consensus disorder prediction 1280 1308 - -
Pral2018g00087 1360 MobiDBLite consensus disorder prediction 1286 1308 - -
Pral2018g00087 1360 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 587 855 IPR027417 -
Pral2018g00087 1360 Pfam SNF2-related domain 623 925 IPR000330 GO:0005524|GO:0140658
Pral2018g00087 1360 Gene3D - 866 1219 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral2018g00087 Pral-Chr2018 402251 419016 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral2018g00087 611 1161 RAD5 or RAD16-like Gene Family AT1G02670 25.044 5.71e-22 100
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Pral2018g00087 SNF2_N 2e-50 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral2018g00087 K10779 - gmx:100794911 2041.93