Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral2018g00086 ATGGAGGGAAAGACTGAGGAAGTGGAAGATATTGGAAGTGCTTCTGGTGGTTCACTTATTGATGATTCAGATGATGGGTCTTCAACTTCTGAATTAGATGGCAGGGCACATCTCGAGGAACCTTTGACTGAGGAAGAAATAGAAGGTCTGATTGCTGAGTTGTTAGAAGTTGAGAGCAAGGCTGCAGAGGCTCAAGAAGCTCTTGAGGAGGAGTCTCTTAACAAAGTAGAGATCGAGGTTAGGCGAGAGTTGGAGCAAACTCTTCAAGGAGATGATTTGGAATCTGCTGTTGCAGATGAGATGACTACTCTTAAAGAAGAGTGGGAAGCTGTTCTGGATGACCTTGAGACTGAAAGTGCCTATTTGCTGGAACAACTTGATATGGCTGGTGTGGAGCTGCCAAGGCTTTATAAGTGGATAGAGAGGGAGGCTCCCAGTGGTTGTTTGACAGAAGCTTGGAAAAAGAGGAATCATTGGGTAGGTACTCAGGCAACTGAAGAATTTGCTGAGTCAGTTGCTGATGCTGAGAAGCATCTAGAAGTCTACAGACCTGTTAGAAGACGACATGGCAAACTGTTGGAAGAGGGTGCCAGTGGATTTCTTAAAAAAAAACTTGATGAATCCATTGAACCGGTAAAGGAAAAAACTGATGTGGATTGGGGTATGTTTAACAAAATATTTCACGATGGTGGTGATGCTGATGCTTCATTTGGCTGTAAGAATTGGGCTTCTGTTTATTTGGCCAGCACTCCGCAACAAGCTGCACTGATGGGCCTTGAATTTCCTGGTGTCAACGAGGTGGAGGAGATTGATGACATTGATGGCACTTCTACTGATCCATTTATTGCAGCTGCAATTGCAAATGAAAAGGAACTAGAACTTTCTGATGAACAGAAGAGAAAGTTTAAAAAGGTCAAAGAAGAAGATGATGTAATTGTTGATCGGAAGCTTCAAATCCATTTAAAACGAAGGAGGTATCGGAAGAATAAAAAACAGAGGGAAACCATAGAGAGTCTCAAGGAAGAAACTTGTGATGATAGTGAAAAGGTGGCTAACAATGAAGTTGAATGTCTGAATATGAAGAATGATAATATTGAAGATCTGGGTGGCATTTATGACCTTGACAAAGTGAAGCCTATGAATATTGGCCCTTTGTCAGAGCTCTCTAAATCTTCATTGCCTGATGTTGAACAAAGAGGTACCAAGCGACTAAATGATGGTGAAGAGTATAGTGATACGAAAAAGGGTCGGACTGTCACTATTAACAGTGGTGATGAAGCTGATGCAGTTGAAAATAATATAGTTAGGGATACAAATGCATTAGATAATCAGTCTGAGATGCAAGGCACTTGTGCTAGCATTGCTGATAGTCTTCCTTCACAGCACCTGGACAAGAAGTTTTGCTGCACTGTTTGTGATAAAGTGGCTCTTGAAGTTCACCAACATCCTCTTTTGGAAGTTATTATTTGCTGGGATTGCAATTCTTTAATGGAAGAAAAGAAACGTGTGAAGGATCTCAATCCTGATTGCTCCGAGTGTTATTGTGCATGGTGTGGGGGAAGCAATGAATTAGTTAGCTGCAAGTCATGCAAAGTGTTGTTCTGCAACAATTGCATAAGGAAGAATCTTGGTGCAGAATTCCTTTCTGAAGTTCAGGCCACTGGTTGGCATTGTTATTGCTGCCACCCAAATCTCTTGCAAAGACTATCATCACAACTAGAGAAAGCTATGGGATCTGTTGAAACATCAGTTTCCAGCTCTAGTAGTGATTCGGATAATTCACATGCAGAGACTAATGTTACAATCAGTTCTAAGCGAAAGCGCAAAAAGAAGATTAGGAGGATCCTTGATGATGCTGAATTAGGAGAGGAAACAAAAAGGAAAATTGCGATAGAAAAGGAGCGTCAGGAACGTTTGGAGTCTTTGCGAGTGCAGTTTTCTGCCTCATCTAACATCATGGGCTCTTCTGGGTATAAGGGGAATTTATCAGAAGGTGCAAGTTCTGAAGTCCTTGGTGACGCATTAACAGGCTATGTAGTAAATGTTGTGAGGGAAAAAGGTGAAGAAGCTGTCAGAATTCCTCCTAGTATATCAGCTAAACTGAAAACTCATCAGATTGCAGGAATAAGATTTATGTGGGAGAATATAATACAGTCAATCAGAAAAGTCAAGTCCGGGGATAAAGGTCTTGGTTGTATCCTCGCTCATACAATGGGCCTTGGTAAAACCTTTCAGGTGATAGCTTTCTTGTACACAGCAATGAGAACCACTGACCTGGGGTTAAGAACTGCACTTATTGTCACGCCAGTCAATGTGCTGCACAATTGGCGGCAGGAGTTTATCAAATGGAGGCCATCAGAACTAAAACCACTCAGGGTCTTCATGCTGGAAGATGTATCAAGGGATAGGAGAGCAGAAATACTTGCAAAATGGAGAAACAAAGGTGGCATATTTCTGATTGGCTATACTGCTTTTCGAAATTTATCTTTTGGAAAGCATGTGAGAGATCGACACACAGCTCGAGAAATTTGCCGTGCTTTGCAGGATGGACCAGACATACTTGTTTGTGATGAAGCGCATATGATAAAGAATATAAAGGCTGGCATAACTCAAGCCTTGAAACAGGTAAAATGCCATAGGAGAATTGCCCTGACTGGATCACCTCTTCAGAACAATCTCATGGAGTATTATTGTATGGTTGATTTTGTAAGAGAAGGTTTTCTTGGAAGCAGTCATGAATTTAGGAATCGCTTCCAAAATCCTATAGAGAATGGTCAACATACTAATTCTACACTGGATGATGTGAAGATTATGAACCAAAGGTCTCACATCCTCTATGAACAATTAAAAGGCTTTGTTCAACGAATGGACATGAGTGTGGTGAAGAATGATTTGCCTCCAAAAACTGTCTTTGTGATAAGCGTCAAGCTTTCTCCTCTGCAGAGAAAACTGTACAAGAGATTTCTCGATGTGCATGGATTCACAAATGACCGGGCTTCTAATGAAAAAATGAGAAAGAGATGTTTTTTTGTTGGGTACCAGGCGTTAGCTCAGATATGGAACCATCCCGGGATCTTGCAATTGACAAAAGAAGACAAGGATTATGTTAGACAAGAAGATGCTGTTGAGAATTTTCTTGTGGATGACAGCTCTAGTGACGAAAATTCTGACTATAGCGTGCCTGTTGGAGAGAAGGTTGGATGTGCAAATGAGTTTCTGCGGAGGAAAGATGAGAATGGCTTTTTTCTAAAGGGTTGGTGGAACGATCTTCTGCATGAGAAAAATTATAAAGAACTTGATTACAGTGGCAAAATGGTTTTGCTTCTGGACATACTAACCATGAGTTCTGATGTGGGTGACAAGGTGTTGGTTTTCAGCCAGAGCATACCAACACTAGACCTCATAGAACTTTATCTATCAAGATTACTTCGACGAGGCAAACATGGCAAATTTTGGAAGAAGGGAAAAGACTGGTATAGGCTGGATGGAAGGACTGAGAGCTCTGAAAGGCAGAAGCTGGTTGAGAGGTTTAATGAGCCTTCCAATAATAGAGTGAAGTGCTCCCTTATTTCAACAAGGGCTGGTTCTTTGGGTATTAATCTCCATGCAGCTAATCGTGTTGTTATAGTTGATGGTTCTTGGAATCCAACATACGATCTCCAGGCCATCTATCGAGCTTGGAGGTATGGCCAGAGAAAGCCTGTGTTTGCTTACCGATTGCTGGCTCATGGAACTATGGAAGAGAAAATATATAAGCGCCAGGTAACAAAGGAGGGGCTTGCTGCTAGAGTGGTTGACAGACAGCAAGTGTACAGGACTATATCTAAAGAAGAGATGTTACATCTCTTTGAGTTTGGTGATGATGAAAACCCTGAGACGTTGGCTGAACTGAGCCAAGAGAATGGGCATTCATTGGAACAAACGATCCCACATTCAAATGGAACCAGCCATTCCGATAAGCTAATGGAAAGCTTACTTAGCAAGCATCATCCCAAGTGGATTGCCAATTATCATGAACACGAAACCTTGTTGCAAGAAAATGAAGAAGAAAAGCTATCAAAAGAGGAGCAAGACATGGCTTGGGAAGTATACCGGAAAACGTTAGAATGGGAGGAAGTGCAGAGAGTACCACTGGGTGAATCTCTGCCTGTTCAAAAGCCCCAAGAGCCGAATAATGCACCCCCTGCATCAAAATCCCGCAGCCTTTCACCAACAAGGGTGAGGAGCCGTTTTGTGACCCGCAAATGCACCAACCTTTCACACTTGCTGACGCTTAGAAGTCAAGGCACTAAATTTGGTTGCAGTACGGTCTGTGGGGAATGCGCCCAAGAGATCAGATGGGAGGACTTGAAGTACAGAGATGGAAGAGCAATAAGGTGA 4380 0.4215 MEGKTEEVEDIGSASGGSLIDDSDDGSSTSELDGRAHLEEPLTEEEIEGLIAELLEVESKAAEAQEALEEESLNKVEIEVRRELEQTLQGDDLESAVADEMTTLKEEWEAVLDDLETESAYLLEQLDMAGVELPRLYKWIEREAPSGCLTEAWKKRNHWVGTQATEEFAESVADAEKHLEVYRPVRRRHGKLLEEGASGFLKKKLDESIEPVKEKTDVDWGMFNKIFHDGGDADASFGCKNWASVYLASTPQQAALMGLEFPGVNEVEEIDDIDGTSTDPFIAAAIANEKELELSDEQKRKFKKVKEEDDVIVDRKLQIHLKRRRYRKNKKQRETIESLKEETCDDSEKVANNEVECLNMKNDNIEDLGGIYDLDKVKPMNIGPLSELSKSSLPDVEQRGTKRLNDGEEYSDTKKGRTVTINSGDEADAVENNIVRDTNALDNQSEMQGTCASIADSLPSQHLDKKFCCTVCDKVALEVHQHPLLEVIICWDCNSLMEEKKRVKDLNPDCSECYCAWCGGSNELVSCKSCKVLFCNNCIRKNLGAEFLSEVQATGWHCYCCHPNLLQRLSSQLEKAMGSVETSVSSSSSDSDNSHAETNVTISSKRKRKKKIRRILDDAELGEETKRKIAIEKERQERLESLRVQFSASSNIMGSSGYKGNLSEGASSEVLGDALTGYVVNVVREKGEEAVRIPPSISAKLKTHQIAGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRTTDLGLRTALIVTPVNVLHNWRQEFIKWRPSELKPLRVFMLEDVSRDRRAEILAKWRNKGGIFLIGYTAFRNLSFGKHVRDRHTAREICRALQDGPDILVCDEAHMIKNIKAGITQALKQVKCHRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRFQNPIENGQHTNSTLDDVKIMNQRSHILYEQLKGFVQRMDMSVVKNDLPPKTVFVISVKLSPLQRKLYKRFLDVHGFTNDRASNEKMRKRCFFVGYQALAQIWNHPGILQLTKEDKDYVRQEDAVENFLVDDSSSDENSDYSVPVGEKVGCANEFLRRKDENGFFLKGWWNDLLHEKNYKELDYSGKMVLLLDILTMSSDVGDKVLVFSQSIPTLDLIELYLSRLLRRGKHGKFWKKGKDWYRLDGRTESSERQKLVERFNEPSNNRVKCSLISTRAGSLGINLHAANRVVIVDGSWNPTYDLQAIYRAWRYGQRKPVFAYRLLAHGTMEEKIYKRQVTKEGLAARVVDRQQVYRTISKEEMLHLFEFGDDENPETLAELSQENGHSLEQTIPHSNGTSHSDKLMESLLSKHHPKWIANYHEHETLLQENEEEKLSKEEQDMAWEVYRKTLEWEEVQRVPLGESLPVQKPQEPNNAPPASKSRSLSPTRVRSRFVTRKCTNLSHLLTLRSQGTKFGCSTVCGECAQEIRWEDLKYRDGRAIR 1459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral2018g00086 1459 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 687 955 IPR027417 -
Pral2018g00086 1459 Coils Coil 322 342 - -
Pral2018g00086 1459 ProSiteProfiles ADD domain profile. 457 589 IPR025766 -
Pral2018g00086 1459 Pfam SNF2-related domain 723 1025 IPR000330 GO:0005524|GO:0140658
Pral2018g00086 1459 PANTHER RAD54-LIKE 24 1451 IPR044574 GO:0016887
Pral2018g00086 1459 SMART ultradead3 697 918 IPR014001 -
Pral2018g00086 1459 MobiDBLite consensus disorder prediction 1296 1318 - -
Pral2018g00086 1459 Gene3D - 966 1318 IPR027417 -
Pral2018g00086 1459 MobiDBLite consensus disorder prediction 396 412 - -
Pral2018g00086 1459 MobiDBLite consensus disorder prediction 385 412 - -
Pral2018g00086 1459 CDD ADDz_ATRX 465 563 - -
Pral2018g00086 1459 CDD SF2_C_SNF 1098 1241 - -
Pral2018g00086 1459 SMART helicmild6 1133 1230 IPR001650 -
Pral2018g00086 1459 MobiDBLite consensus disorder prediction 28 44 - -
Pral2018g00086 1459 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1110 1278 IPR001650 -
Pral2018g00086 1459 MobiDBLite consensus disorder prediction 1 47 - -
Pral2018g00086 1459 MobiDBLite consensus disorder prediction 1379 1407 - -
Pral2018g00086 1459 MobiDBLite consensus disorder prediction 1385 1407 - -
Pral2018g00086 1459 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 961 1304 IPR027417 -
Pral2018g00086 1459 Coils Coil 47 81 - -
Pral2018g00086 1459 Gene3D - 674 955 IPR038718 -
Pral2018g00086 1459 Coils Coil 1337 1357 - -
Pral2018g00086 1459 Coils Coil 98 125 - -
Pral2018g00086 1459 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 723 906 IPR014001 -
Pral2018g00086 1459 MobiDBLite consensus disorder prediction 580 605 - -
Pral2018g00086 1459 MobiDBLite consensus disorder prediction 580 600 - -
Pral2018g00086 1459 Pfam Helicase conserved C-terminal domain 1106 1230 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral2018g00086 Pral-Chr2018 402251 420257 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral2018g00086 765 1283 RAD5 or RAD16-like Gene Family AT5G22750 25.945 3.64e-31 131
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Pral2018g00086 SNF2_N 2.3e-50 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral2018g00086 K10779 - gmx:100794911 2143.62