Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral2018g00085 ATGGAGGGAAAGACTGAGGAAGTGGAAGATATTGGAAGTGCTTCTGGTGGTTCACTTATTGATGATTCAGATGATGGGTCTTCAACTTCTGAATTAGATGGCAGGGCACATCTCGAGGAACCTTTGACTGAGGAAGAAATAGAAGGTCTGATTGCTGAGTTGTTAGAAGTTGAGAGCAAGGCTGCAGAGGCTCAAGAAGCTCTTGAGGAGGAGTCTCTTAACAAAGTAGAGATCGAGGTTAGGCGAGAGTTGGAGCAAACTCTTCAAGGAGATGATTTGGAATCTGCTGTTGCAGATGAGATGACTACTCTTAAAGAAGAGTGGGAAGCTGTTCTGGATGACCTTGAGACTGAAAGTGCCTATTTGCTGGAACAACTTGATATGGCTGGTGTGGAGCTGCCAAGGCTTTATAAGTGGATAGAGAGGGAGGCTCCCAGTGGTTGTTTGACAGAAGCTTGGAAAAAGAGGAATCATTGGGTAGGTACTCAGGCAACTGAAGAATTTGCTGAGTCAGTTGCTGATGCTGAGAAGCATCTAGAAGTCTACAGACCTGTTAGAAGACGACATGGCAAACTGTTGGAAGAGGGTGCCAGTGGATTTCTTAAAAAAAAACTTGATGAATCCATTGAACCGGTAAAGGAAAAAACTGATGTGGATTGGGGTATGTTTAACAAAATATTTCACGATGGTGGTGATGCTGATGCTTCATTTGGCTGTAAGAATTGGGCTTCTGTTTATTTGGCCAGCACTCCGCAACAAGCTGCACTGATGGGCCTTGAATTTCCTGGTGTCAACGAGGTGGAGGAGATTGATGACATTGATGGCACTTCTACTGATCCATTTATTGCAGCTGCAATTGCAAATGAAAAGGAACTAGAACTTTCTGATGAACAGAAGAGAAAGTTTAAAAAGGTCAAAGAAGAAGATGATGTAATTGTTGATCGGAAGCTTCAAATCCATTTAAAACGAAGGAGGTATCGGAAGAATAAAAAACAGAGGGAAACCATAGAGAGTCTCAAGGAAGAAACTTGTGATGATAGTGAAAAGGTGGCTAACAATGAAGTTGAATGTCTGAATATGAAGAATGATAATATTGAAGATCTGGGTGGCATTTATGACCTTGACAAAGTGAAGCCTATGAATATTGGCCCTTTGTCAGAGCTCTCTAAATCTTCATTGCCTGATGTTGAACAAAGAGGTACCAAGCGACTAAATGATGGTGAAGAGTATAGTGATACGAAAAAGGGTCGGACTGTCACTATTAACAGTGGTGATGAAGCTGATGCAGTTGAAAATAATATAGTTAGGGATACAAATGCATTAGATAATCAGTCTGAGATGCAAGGCACTTGTGCTAGCATTGCTGATAGTCTTCCTTCACAGCACCTGGACAAGAAGTTTTGCTGCACTGTTTGTGATAAAGTGGCTCTTGAAGTTCACCAACATCCTCTTTTGGAAGTTATTATTTGCTGGGATTGCAATTCTTTAATGGAAGAAAAGAAACGTGTGAAGGATCTCAATCCTGATTGCTCCGAGTGTTATTGTGCATGGTGTGGGGGAAGCAATGAATTAGTTAGCTGCAAGTCATGCAAAGTGTTGTTCTGCAACAATTGCATAAGGAAGAATCTTGGTGCAGAATTCCTTTCTGAAGTTCAGGCCACTGGTTGGCATTGTTATTGCTGCCACCCAAATCTCTTGCAAAGACTATCATCACAACTAGAGAAAGCTATGGGATCTGTTGAAACATCAGTTTCCAGCTCTAGTAGTGATTCGGATAATTCACATGCAGAGACTAATGTTACAATCAGTTCTAAGCGAAAGCGCAAAAAGAAGATTAGGAGGATCCTTGATGATGCTGAATTAGGAGAGGAAACAAAAAGGAAAATTGCGATAGAAAAGGAGCGTCAGGAACGTTTGGAGTCTTTGCGAGTGCAGTTTTCTGCCTCATCTAACATCATGGGCTCTTCTGGGTATAAGGGGAATTTATCAGAAGGTGCAAGTTCTGAAGTCCTTGGTGACGCATTAACAGGCTATGTAGTAAATGTTGTGAGGGAAAAAGGTGAAGAAGCTGTCAGAATTCCTCCTAGTATATCAGCTAAACTGAAAACTCATCAGATTGCAGGAATAAGATTTATGTGGGAGAATATAATACAGTCAATCAGAAAAGTCAAGTCCGGGGATAAAGGTCTTGGTTGTATCCTCGCTCATACAATGGGCCTTGGTAAAACCTTTCAGGTGATAGCTTTCTTGTACACAGCAATGAGAACCACTGACCTGGGGTTAAGAACTGCACTTATTGTCACGCCAGTCAATGTGCTGCACAATTGGCGGCAGGAGTTTATCAAATGGAGGCCATCAGAACTAAAACCACTCAGGGTCTTCATGCTGGAAGATGTATCAAGGGATAGGAGAGCAGAAATACTTGCAAAATGGAGAAACAAAGGTGGCATATTTCTGATTGGCTATACTGCTTTTCGAAATTTATCTTTTGGAAAGCATGTGAGAGATCGACACACAGCTCGAGAAATTTGCCGTGCTTTGCAGGATGGACCAGACATACTTGTTTGTGATGAAGCGCATATGATAAAGAATATAAAGGCTGGCATAACTCAAGCCTTGAAACAGGTAAAATGCCATAGGAGAATTGCCCTGACTGGATCACCTCTTCAGAACAATCTCATGGAGTATTATTGTATGGTTGATTTTGTAAGAGAAGGTTTTCTTGGAAGCAGTCATGAATTTAGGAATCGCTTCCAAAATCCTATAGAGAATGGTCAACATACTAATTCTACACTGGATGATGTGAAGATTATGAACCAAAGGTCTCACATCCTCTATGAACAATTAAAAGGCTTTGTTCAACGAATGGACATGAGTGTGGTGAAGAATGATTTGCCTCCAAAAACTGTCTTTGTGATAAGCGTCAAGCTTTCTCCTCTGCAGAGAAAACTGTACAAGAGATTTCTCGATGTGCATGGATTCACAAATGACCGGGCTTCTAATGAAAAAATGAGAAAGAGATGTTTTTTTGTTGGGTACCAGGCGTTAGCTCAGATATGGAACCATCCCGGGATCTTGCAATTGACAAAAGAAGACAAGGATTATGTTAGACAAGAAGATGCTGTTGAGAATTTTCTTGTGGATGACAGCTCTAGTGACGAAAATTCTGACTATAGCGTGCCTGTTGGAGGAGAGAAGGTTGGATGTGCAAATGAGTTTCTGCGGAGGAAAGATGAGAATGGCTTTTTTCTAAAGGGTTGGTGGAACGATCTTCTGCATGAGAAAAATTATAAAGAACTTGATTACAGTGGCAAAATGGTTTTGCTTCTGGACATACTAACCATGAGTTCTGATGTGGGTGACAAGGTGTTGGTTTTCAGCCAGAGCATACCAACACTAGACCTCATAGAACTTTATCTATCAAGATTACTTCGACGAGGCAAACATGGCAAATTTTGGAAGAAGGGAAAAGACTGGTATAGGCTGGATGGAAGGACTGAGAGCTCTGAAAGGCAGAAGCTGGTTGAGAGGTTTAATGAGCCTTCCAATAATAGAGTGAAGTGCTCCCTTATTTCAACAAGGGCTGGTTCTTTGGGTATTAATCTCCATGCAGCTAATCGTGTTGTTATAGTTGATGGTTCTTGGAATCCAACATACGATCTCCAGGCCATCTATCGAGCTTGGAGGTATGGCCAGAGAAAGCCTGTGTTTGCTTACCGATTGCTGGCTCATGGAACTATGGAAGAGAAAATATATAAGCGCCAGGTAACAAAGGAGGGGCTTGCTGCTAGAGTGGTTGACAGACAGCAAGTGTACAGGACTATATCTAAAGAAGAGATGTTACATCTCTTTGAGTTTGGTGATGATGAAAACCCTGAGACGTTGGCTGAACTGAGCCAAGAGAATGGGCATTCATTGGAACAAACGATCCCACATTCAAATGGAACCAGCCATTCCGATAAGCTAATGGAAAGCTTACTTAGCAAGCATCATCCCAAGTGGATTGCCAATTATCATGAACACGAAACCTTGTTGCAAGAAAATGAAGAAGAAAAGCTATCAAAAGAGGAGCAAGACATGGCTTGGGAAGTATACCGGAAAACGTTAGAATGGGAGGAAGTGCAGAGAGTACCACTGGGTGAATCTCTGCCTGTTCAAAAGCCCCAAGAGCCGAATAATGCACCCCCTGCATCAAAATCCCGCAGCCTTTCACCAACAAGGGTGAGGAGCCGTTTTGTGACCCGCAAATGCACCAACCTTTCACACTTGCTGACGCTTAGAAGTCAAGGCACTAAATTTGGTTGCAGTACGGTCTGTGGGGAATGCGCCCAAGAGATCAGATGGGAGGACTTGAAGTACAGAGATGGAAGAGCAATAAGGTGA 4383 0.4216 MEGKTEEVEDIGSASGGSLIDDSDDGSSTSELDGRAHLEEPLTEEEIEGLIAELLEVESKAAEAQEALEEESLNKVEIEVRRELEQTLQGDDLESAVADEMTTLKEEWEAVLDDLETESAYLLEQLDMAGVELPRLYKWIEREAPSGCLTEAWKKRNHWVGTQATEEFAESVADAEKHLEVYRPVRRRHGKLLEEGASGFLKKKLDESIEPVKEKTDVDWGMFNKIFHDGGDADASFGCKNWASVYLASTPQQAALMGLEFPGVNEVEEIDDIDGTSTDPFIAAAIANEKELELSDEQKRKFKKVKEEDDVIVDRKLQIHLKRRRYRKNKKQRETIESLKEETCDDSEKVANNEVECLNMKNDNIEDLGGIYDLDKVKPMNIGPLSELSKSSLPDVEQRGTKRLNDGEEYSDTKKGRTVTINSGDEADAVENNIVRDTNALDNQSEMQGTCASIADSLPSQHLDKKFCCTVCDKVALEVHQHPLLEVIICWDCNSLMEEKKRVKDLNPDCSECYCAWCGGSNELVSCKSCKVLFCNNCIRKNLGAEFLSEVQATGWHCYCCHPNLLQRLSSQLEKAMGSVETSVSSSSSDSDNSHAETNVTISSKRKRKKKIRRILDDAELGEETKRKIAIEKERQERLESLRVQFSASSNIMGSSGYKGNLSEGASSEVLGDALTGYVVNVVREKGEEAVRIPPSISAKLKTHQIAGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRTTDLGLRTALIVTPVNVLHNWRQEFIKWRPSELKPLRVFMLEDVSRDRRAEILAKWRNKGGIFLIGYTAFRNLSFGKHVRDRHTAREICRALQDGPDILVCDEAHMIKNIKAGITQALKQVKCHRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRFQNPIENGQHTNSTLDDVKIMNQRSHILYEQLKGFVQRMDMSVVKNDLPPKTVFVISVKLSPLQRKLYKRFLDVHGFTNDRASNEKMRKRCFFVGYQALAQIWNHPGILQLTKEDKDYVRQEDAVENFLVDDSSSDENSDYSVPVGGEKVGCANEFLRRKDENGFFLKGWWNDLLHEKNYKELDYSGKMVLLLDILTMSSDVGDKVLVFSQSIPTLDLIELYLSRLLRRGKHGKFWKKGKDWYRLDGRTESSERQKLVERFNEPSNNRVKCSLISTRAGSLGINLHAANRVVIVDGSWNPTYDLQAIYRAWRYGQRKPVFAYRLLAHGTMEEKIYKRQVTKEGLAARVVDRQQVYRTISKEEMLHLFEFGDDENPETLAELSQENGHSLEQTIPHSNGTSHSDKLMESLLSKHHPKWIANYHEHETLLQENEEEKLSKEEQDMAWEVYRKTLEWEEVQRVPLGESLPVQKPQEPNNAPPASKSRSLSPTRVRSRFVTRKCTNLSHLLTLRSQGTKFGCSTVCGECAQEIRWEDLKYRDGRAIR 1460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral2018g00085 1460 Pfam Helicase conserved C-terminal domain 1107 1231 IPR001650 -
Pral2018g00085 1460 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 687 955 IPR027417 -
Pral2018g00085 1460 Coils Coil 322 342 - -
Pral2018g00085 1460 Pfam SNF2-related domain 723 1025 IPR000330 GO:0005524|GO:0140658
Pral2018g00085 1460 SMART helicmild6 1134 1231 IPR001650 -
Pral2018g00085 1460 ProSiteProfiles ADD domain profile. 457 589 IPR025766 -
Pral2018g00085 1460 SMART ultradead3 697 918 IPR014001 -
Pral2018g00085 1460 MobiDBLite consensus disorder prediction 396 412 - -
Pral2018g00085 1460 MobiDBLite consensus disorder prediction 385 412 - -
Pral2018g00085 1460 CDD ADDz_ATRX 465 563 - -
Pral2018g00085 1460 Coils Coil 1338 1358 - -
Pral2018g00085 1460 MobiDBLite consensus disorder prediction 28 44 - -
Pral2018g00085 1460 CDD SF2_C_SNF 1099 1242 - -
Pral2018g00085 1460 MobiDBLite consensus disorder prediction 1 47 - -
Pral2018g00085 1460 MobiDBLite consensus disorder prediction 1297 1319 - -
Pral2018g00085 1460 PANTHER RAD54-LIKE 24 1452 IPR044574 GO:0016887
Pral2018g00085 1460 Coils Coil 47 81 - -
Pral2018g00085 1460 Gene3D - 674 955 IPR038718 -
Pral2018g00085 1460 Coils Coil 98 125 - -
Pral2018g00085 1460 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1111 1279 IPR001650 -
Pral2018g00085 1460 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 723 906 IPR014001 -
Pral2018g00085 1460 MobiDBLite consensus disorder prediction 580 605 - -
Pral2018g00085 1460 MobiDBLite consensus disorder prediction 580 600 - -
Pral2018g00085 1460 MobiDBLite consensus disorder prediction 1380 1408 - -
Pral2018g00085 1460 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 961 1305 IPR027417 -
Pral2018g00085 1460 Gene3D - 966 1319 IPR027417 -
Pral2018g00085 1460 MobiDBLite consensus disorder prediction 1386 1408 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral2018g00085 Pral-Chr2018 402251 430723 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral2018g00085 711 1261 RAD5 or RAD16-like Gene Family AT1G02670 25.044 6.87e-22 100
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Pral2018g00085 SNF2_N 2.3e-50 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral2018g00085 K10779 - gmx:100794911 2140.54