Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral2018g00075 ATGACGAGGACTCCTTGTTGTGAGAAAATGGGATTGAAGAAGGGACCGTGGACTCCTGAAGAAGATCAGATTTTGATCTCTTACATCCAACGATATGGGCATGGAAACTGGCGGGCTCTTCCTAAACAGGCTGGTTTATTGAGGTGTGGGAAAAGTTGCAGGCTTCGTTGGATAAATTACTTGAGACCTGATATAAAACGAGGGAAATTCAGCAAGGAAGAAGAAGAAACCATCCTCAAACTGCATCAAATTCTTGGAAATAGATGGTCTGCTATTGCGGCGAGATTGCCAGGACGAACAGATAATGAAATAAAGAATTTTTGGCACACCCACCTGAAGAAGAGGCTGGAAAGATGCGAAGTGCGTAAAGTAAGTGCGCCCTCCTCTTGGACACAAGCATCTTCGAGCAAAGGGGTCGTGATGCTACCTATGCCACAGTTAGCAGTAGCAGCCTCGGAATCATCAAGTTCTGCTGATCTTGGCTTCACTGGCAAAGTTCTGATGAGTGCTAATGAGGGTTTAGCGTCAAGGAAATATGCGGCCACGGTGGATTCAGGATTTCATGGCGCACATTCTGGTGATGCATCTGGGGAAACCCTAGGCGGCCATAGATCTAACAACATCAGTGAAGAAATGGAATTTTGGTATGATCTATTCATGAAAGCCGGACAGCCGCCGCAAGTGCATGCAAATCTCGGACAGATTGCATGA 711 0.4627 MTRTPCCEKMGLKKGPWTPEEDQILISYIQRYGHGNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGKFSKEEEETILKLHQILGNRWSAIAARLPGRTDNEIKNFWHTHLKKRLERCEVRKVSAPSSWTQASSSKGVVMLPMPQLAVAASESSSSADLGFTGKVLMSANEGLASRKYAATVDSGFHGAHSGDASGETLGGHRSNNISEEMEFWYDLFMKAGQPPQVHANLGQIA 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral2018g00075 236 CDD SANT 69 112 IPR001005 -
Pral2018g00075 236 FunFam MYB-related transcription factor 13 66 - -
Pral2018g00075 236 Gene3D - 13 66 - -
Pral2018g00075 236 CDD SANT 16 61 IPR001005 -
Pral2018g00075 236 FunFam MYB transcription factor 69 116 - -
Pral2018g00075 236 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Pral2018g00075 236 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Pral2018g00075 236 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Pral2018g00075 236 SUPERFAMILY Homeodomain-like 10 108 IPR009057 -
Pral2018g00075 236 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Pral2018g00075 236 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Pral2018g00075 236 SMART sant 66 114 IPR001005 -
Pral2018g00075 236 SMART sant 13 63 IPR001005 -
Pral2018g00075 236 Gene3D - 69 116 - -
Pral2018g00075 236 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Pral2018g00075 236 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 150 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral2018g00075 Pral-Chr2018 361500 362855 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral2018g00075 1 219 MYB Transcription Factor Family AT2G31180 51.037 1.18e-75 227
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pral2018g00075 Myb_DNA-binding 1.6e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral2018g00075 K09422 - gmx:102663040 282.722