Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral2018g00069 ATGGGGACAGAGCTCATGAGAACATGTGTCCAAGAAGATAACGATGAGTTTCCATCAGTTCCACCTGGCTTTGAGTCATATACTTCTTCCTCACTGAATAGGGGGGAAGGCATTGAGAAGCAGAATGATAACAACATGATTAGTTTTTCCGTCTCTACAAGTGTTTCTAATTGTAAACTACAGTCAATTCAGCCTAAAACTGATGTTCAAGTTAGTGATAGTGCAAAGGTTCATAGGTCCCTTCGACGAAGACGATGGATCAACCATGGAGATAACAGTTCAGAGGAAGACTCTGATTCTGAGCGGCTTGATCAAAATTTTTCCTCAGTGCCTTGCCTTCCAAAGGGAGTTATCCGTGGATGTCCAGATTGCAGTAATTGCCAAAAGGTTATCGCCAAATGGAGACCAGAAGATGCTTGCAGGCCTGCCCTTGAGGATGCTCCTGTTTTTTACCCAACTGAAGAGGAGTTTCAAGATACCATGAAATACATAGCAAGTATTTGTTCCAGAGCAAAACCATATGGCATTTGTCGCATTGTTCCCCCTTCATCTTGGAAGCCCCCTTGTCCTCTTAAGGGGAAGACAATATGGGAGGGTTCTAAATTTGCTACTCGTGTTCAGAGGATTGATAAGCTTCAGAATCGTGATTCAATGAAAAAGATGTCAAGGATTCATTTTAATTCCAGACGGAAAAGGAAAAGATGCCCTAGAATGGGATTGGATAATGGCAGTAACAGAGGACCTAATGCAGGATTTTGTGAGATTGAAAGGCCCTTTGGGTTTGAACCTGGCCCAGACTTTACTTTGGAAACATTTCAGAGGTATGCAGATGAATTTAAGGCCAGATACTTCAGAAAGAATGAGAACATATCTAATATGGGAGGTAATACAACAATGTCAAAAGAATGGGAGCCTTCTGTGGAGAACATAGAGGGTGAATATTGGCGAATGGTGGAGAGACCTACTGAAGAAATTGAGGTGCTTTATGGAGCTGACCTGGAAACTGGGGTTTTTGGGAGTGGTTTTCCCAAAAAGCATAGTGAAGTTGGTTCTGATTCACACTCAGAGTACATAAAGTCTGGCTGGAATTTAAATAACTTTGCTAGGCTTCCTGGATCTCTACTTTCATATGAAAGCAGCGATATATCTGGTGTTGTGCCATGGTTGTATATAGGAATGTGTTTTTCTTCCTTTTGTTGGCATGTGGAGGATCACCATTTATATTCATTGAATTACATGCATTGGGGTGCTCCAAAAATGTGGTATGGTGTTCCTGGCAAAGATGCTTGCAAATTGGAAGAGGCCATGAGAAAGCATTTACCGGACCTTTTCAAAGAACAACCTGATTTGCTTCATAAGCTGGTCACTCAGCTTTCTCCTTCTATCCTCAAGTCTGAAGGAGTGCCTGTCTATAGGTGTGTCCAGAACCCCGGAGAGTTTGTTCTGACATTCCCTCGAGCGTATCATTCTGGATTCAATTGTGGCTTCAACTGTGCAGAGGCTGTTAATGTAGCTCCAGTTGACTGGCTGCCCCACGGGCAGATTGCCATTGAGCTATACCAGCAGCAAGGTCGTAAGACTTCTATATCTCATGACAAACTGTTGCTTGGGGCTGCTAGGGAAGCAGTACGAGCACTGTGGGAGCTTGATCTGTTGAAGAAGAATACTTCGGATAATTTAGGGTGGAAAGATGTCTGTGGAAAAGATGGTGTTCTAGCAAAAGCACTCAAGACACGCGTTGAGATGGAGCAAGTAAGGAGGAAATTTCTCTGCAGTTCTTCACAGGCATTGAAAATGGAGAGCAGTTTTGATGCCACAAGTGAAAGGGAATGCAGTGTTTGCTATTTTGATTTACACTTATCTGCAGCTGGATGCCATTGTTCCCCAGAACGATATGCTTGTTTGGATCATGCAAAGCAGTTCTGTTCATGTGCTTTGGGTTCCAAATTCTTCCTCTTCCGTTATGATATTAGTGAATTATTCATCCTCGTTGAGGCATTGGAAGGAAAGTTAAGTGCAGTATACAGATGGGCAAAAGCAGATCTTGGGCTGGCGCTAACTTCTTCATTATCAAAAGACAAAAGCCAATGTGGTTACTTAATTCAGTCTTCAAAGGAAACGATGCTTCACAAGTTGAGATTAGATTCATCAGATCCGTCTGGTTCTTGCGGCACTATGCTTAAGGAGATGACATTGCATCCGTCATTTGCTTCTATTGAAGATTCTCATTTGATAGATGTCCCAATAGAGAATCTGATGACTTCTGCAAAAAGCATTGATCAGGGTTTTATAAAACTAAGAAAATCAACAGAAGATGTGATTTCCTTGGGTTATTCAAAAGAACTGTCTACATCTAATGGCTGGACAACCCCATGTGAGATGACTAGTCACGAGACATATTCTGAGAAAGAATCAATTATGTGCGAATCTGCTGTTGGGAATCCAGTAGGGGAGACTTCATATTCTTTGCCTCTTCCTTTAGCTGAACATGGACCTAAGAAAACTCCTTATGGACAAGATAATGTTATACTTCTTAGTGATGACGAAACTGATGAACCTAAGATGACAGAAACAGATAGCAAGAAAGAGCTTTCTCAAAGGCTTATAGGTTCTTGTGAGAGACTAGACCCATGCAATTGTAAAGAAGATCCAGACAGGACTATCCCACCCATTGTCTCACTGGCCGACCCTGATGTCATGGATGCTACTCTAAAGGTTGGGAATGATGTGTCTCATGAAAATATGAGTTCTCACTCAGCTTATTTGCATGCAAAACGGGAACATGATATAATTAAGGGGGCAGTTTTAGATTCTACCCTAGTGGATTTCTCCTGCAATACCGGTCATGGTAGTGCAGAATCAGTCAGACAAATTCAGGCTTCCTCAACGGGAGAGAGTGGAGATCATTGTCTGGGTTCTTCTGAGAGTCGTCCTTTGAATCCAGAGCATTCTGGGAGTGTCAAGCCTAAGAACGAGGACAACCATGAGAAGATTGGAGTATGTAGTGCAAATAATAGTAGAGTTGTTAACGGAAACCTGTCTTGCAGTCCAAACAATTTGGGAAGATACTATCGTCAGAAAGGTCCTCGGATAGCAAAGGTTGTCCGGCGTATCAACTGCAATGTTGAGCCTCTAGAATTTGGAATTATATTTTCTGGAAAGTCATGGTGCAACAGTCGGACTATATTTCCAAAGGGATTTAGAAGCCGTGTAAGATACTTAAGTATCTTAGATCCAACAAGTATGTGTTGTTATATTTCAGAAATTCTTGATGCTGGACGGGATGGGCCTCTGTTTATGGTGTCCTTGGAACATCACCCAAATGAGGTCTTCATTCATATTTCTGCCGGTCGATGCTGGGAACTGGTAAGAGAGAGAGTGAATCAAGAGATCACAAGGCAACATAAGCTGGGAAAAAAGGACCTTCCTCCTTTGCAGCCACCTGGAAGCATTGATGGCTTTGAAATGTTTGGGTTTTCTTCGCCAGCAATAGTGCAGGCTATCGAGGCATCGGATCAAAATCGCGTCTGCAAGGAATATTGGGATTCACGGCCGTATTCACGGCCTCTAGGGCAAATTCAACAAGCCTCGCAGCCCAAAGAAAATGGTGCTATTGCGGATAGGCCGTTCCAGGGGGAAAATGTTCAAGGGGTCCTCAGGAATCTGGTCATGCCTGTTGGGATAGATGCAGTATTAAGGAGCCTGTTCAAAAAGGCCGATGAACAAGAATTGAGCTCACTGTGCAGCATTCTTTGTGACAATAACAATACTGCAGCTGACGGCAGCCTAATTGTTCAACTTCTCAATGAAGAAATCAGCAGTCGTCCCAGATGA 3834 0.4283 MGTELMRTCVQEDNDEFPSVPPGFESYTSSSLNRGEGIEKQNDNNMISFSVSTSVSNCKLQSIQPKTDVQVSDSAKVHRSLRRRRWINHGDNSSEEDSDSERLDQNFSSVPCLPKGVIRGCPDCSNCQKVIAKWRPEDACRPALEDAPVFYPTEEEFQDTMKYIASICSRAKPYGICRIVPPSSWKPPCPLKGKTIWEGSKFATRVQRIDKLQNRDSMKKMSRIHFNSRRKRKRCPRMGLDNGSNRGPNAGFCEIERPFGFEPGPDFTLETFQRYADEFKARYFRKNENISNMGGNTTMSKEWEPSVENIEGEYWRMVERPTEEIEVLYGADLETGVFGSGFPKKHSEVGSDSHSEYIKSGWNLNNFARLPGSLLSYESSDISGVXVPWLYIGMCFSSFCWHVEDHHLYSLNYMHWGAPKMWYGVPGKDACKLEEAMRKHLPDLFKEQPDLLHKLVTQLSPSILKSEGVPVYRCVQNPGEFVLTFPRAYHSGFNCGFNCAEAVNVAPVDWLPHGQIAIELYQQQGRKTSISHDKLLLGAAREAVRALWELDLLKKNTSDNLGWKDVCGKDGVLAKALKTRVEMEQVRRKFLCSSSQALKMESSFDATSERECSVCYFDLHLSAAGCHCSPERYACLDHAKQFCSCALGSKFFLFRYDISELFILVEALEGKLSAVYRWAKADLGLALTSSLSKDKSQCGYLIQSSKETMLHKLRLDSSDPSGSCGTMLKEMTLHPSFASIEDSHLIDVPIENLMTSAKSIDQGFIKLRKSTEDVISLGYSKELSTSNGWTTPCEMTSHETYSEKESIMCESAVGNPVGETSYSLPLPLAEHGPKKTPYGQDNVILLSDDETDEPKMTETDSKKELSQRLIGSCERLDPCNCKEDPDRTIPPIVSLADPDVMDATLKVGNDVSHENMSSHSAYLHAKREHDIIKGAVLDSTLVDFSCNTGHGSAESVRQIQASSTGESGDHCLGSSESRPLNPEHSGSVKPKNEDNHEKIGVCSANNSRVVNGNLSCSPNNLGRYYRQKGPRIAKVVRRINCNVEPLEFGIIFSGKSWCNSRTIFPKGFRSRVRYLSILDPTSMCCYISEILDAGRDGPLFMVSLEHHPNEVFIHISAGRCWELVRERVNQEITRQHKLGKKDLPPLQPPGSIDGFEMFGFSSPAIVQAIEASDQNRVCKEYWDSRPYSRPLGQIQQASQPKENGAIADRPFQGENVQGVLRNLVMPVGIDAVLRSLFKKADEQELSSLCSILCDNNNTAADGSLIVQLLNEEISSRPR 1278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral2018g00069 1278 ProSiteProfiles FYR domain FYRN motif profile. 1035 1093 IPR003888 GO:0005634
Pral2018g00069 1278 PANTHER LYSINE-SPECIFIC DEMETHYLASE 139 1173 - -
Pral2018g00069 1278 FunFam Putative lysine-specific demethylase JMJ16 1041 1179 - -
Pral2018g00069 1278 ProSiteProfiles FYR domain FYRC motif profile. 1095 1185 IPR003889 GO:0005634
Pral2018g00069 1278 Pfam jmjN domain 148 181 IPR003349 -
Pral2018g00069 1278 Pfam JmjC domain, hydroxylase 389 505 IPR003347 -
Pral2018g00069 1278 Pfam F/Y rich C-terminus 1097 1181 IPR003889 GO:0005634
Pral2018g00069 1278 SMART fyrc_3 1099 1193 IPR003889 GO:0005634
Pral2018g00069 1278 SMART fyrn_3 1049 1093 IPR003888 GO:0005634
Pral2018g00069 1278 ProSiteProfiles JmjN domain profile. 147 188 IPR003349 -
Pral2018g00069 1278 MobiDBLite consensus disorder prediction 1 39 - -
Pral2018g00069 1278 Gene3D Cupin 132 506 - -
Pral2018g00069 1278 MobiDBLite consensus disorder prediction 955 1000 - -
Pral2018g00069 1278 SUPERFAMILY Clavaminate synthase-like 264 548 - -
Pral2018g00069 1278 MobiDBLite consensus disorder prediction 23 39 - -
Pral2018g00069 1278 Pfam C5HC2 zinc finger 612 661 IPR004198 -
Pral2018g00069 1278 SMART cupin_9 359 522 IPR003347 -
Pral2018g00069 1278 Pfam F/Y-rich N-terminus 1048 1090 IPR003888 GO:0005634
Pral2018g00069 1278 SMART JmjN_1 146 187 IPR003349 -
Pral2018g00069 1278 ProSiteProfiles JmjC domain profile. 359 522 IPR003347 -
Pral2018g00069 1278 MobiDBLite consensus disorder prediction 955 971 - -
Pral2018g00069 1278 Gene3D - 1042 1179 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral2018g00069 Pral-Chr2018 332392 341816 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral2018g00069 1 1276 JUMONJI Transcription Factor Family AT1G08620 53.426 0.0 1228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Pral2018g00069 JmjC 1e-46 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral2018g00069 K11446 - gmx:100800271 1730.69