Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral2018g00059 ATGGAACCCAATGAAAACCAGCTCAGCTCCTACTTCCACCATCAGCAACAGCAGACCACCACCTCCGCCGCCGCCCCCACCACATCCTCCCCGACCAATGGCCTCTTACCCAACACTGACTCCTCCCACATGGTCTTCCCTCATTCCGTGCCCTCTGCGGTGTCCTCTCAATTGGAACCCCCAAAGAGGAAGAGAGGCAGGCCCAGGAAGTACGGAACCCCCGAGCAAGCTCTAGCCGCAAAGAAAGCCGCCACCTCCTCCTCTCACTCTTTCAACAGGGATAAGAAGGGCCACGCTTTGGGTGGTCCCTCTGCTTCGTCTTCGTACACCGGCTCCTCCAAGAAATCCCACTTGTCTTCTCTAGGTCAAGGCTTCACCCCGCATGTCATTACTGTTGCTGCTGGTGAGGATGTTGGCCAAAAAATTATGTTGTTCATGCAACAAAGTAGGCGGGAAATGTGCATCTTGTCCGCATCTGGTTCCATCTCTAATGCCTCTCTTCGTCAGCCTGCAACCTCTGGAGGCAACATCGCGTATGAGGGTCGATTTGAGATTATTTCACTTTCTGGTTCCTACGTCCGTACTGAACTTGGAGGGCGCACTGGTGGTCTTAGTGTATGCTTATCGAGTACTGATGGTCAAATCATAGGTGGAGGAGTTGGTGGGCCATTAAAAGCTGCTGGTCCAGTTCAGGTCATTGTTGGTACATTTTTTCTGGATGCCAAGAAGGATGCTGGAGCTAGTGCTGGTGTAAAAGGTGATGCTTCTGGGAGCAAGTTTGGTTCATTGGTTGGGGAATCGGTGTCAAGTTTAGGGTACCAGCCGGGTGTTGAATCTTCCGGTGGGAATCCAATTCACGGAAATGATGATGATCATCATGCTGTTGGTGGGAGTCATTTCATGATTCAACAACGTGGAGTGCATGTGACACCACCTCAGCCCTCAGAGTGGTGGGCGCGTCCTGATTCCAGAAATGCTGGCTTTGAACAAATGACAGGAAAAACAGGCCATGGGGCTCACCAGTCTCCAGAGAACGGGGATTATTTAACATGA 1053 0.5166 MEPNENQLSSYFHHQQQQTTTSAAAPTTSSPTNGLLPNTDSSHMVFPHSVPSAVSSQLEPPKRKRGRPRKYGTPEQALAAKKAATSSSHSFNRDKKGHALGGPSASSSYTGSSKKSHLSSLGQGFTPHVITVAAGEDVGQKIMLFMQQSRREMCILSASGSISNASLRQPATSGGNIAYEGRFEIISLSGSYVRTELGGRTGGLSVCLSSTDGQIIGGGVGGPLKAAGPVQVIVGTFFLDAKKDAGASAGVKGDASGSKFGSLVGESVSSLGYQPGVESSGGNPIHGNDDDHHAVGGSHFMIQQRGVHVTPPQPSEWWARPDSRNAGFEQMTGKTGHGAHQSPENGDYLT 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral2018g00059 350 Gene3D - 127 252 - -
Pral2018g00059 350 Pfam Plants and Prokaryotes Conserved (PCC) domain 127 237 IPR005175 -
Pral2018g00059 350 CDD DUF296 126 237 IPR005175 -
Pral2018g00059 350 ProSiteProfiles PPC domain profile profile. 122 261 IPR005175 -
Pral2018g00059 350 MobiDBLite consensus disorder prediction 271 296 - -
Pral2018g00059 350 MobiDBLite consensus disorder prediction 308 350 - -
Pral2018g00059 350 MobiDBLite consensus disorder prediction 103 120 - -
Pral2018g00059 350 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 18 256 IPR039605 GO:0003680
Pral2018g00059 350 MobiDBLite consensus disorder prediction 1 56 - -
Pral2018g00059 350 MobiDBLite consensus disorder prediction 1 120 - -
Pral2018g00059 350 SUPERFAMILY AF0104/ALDC/Ptd012-like 124 237 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral2018g00059 Pral-Chr2018 286656 292588 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral2018g00059 41 348 AT-hook Motif Nuclear Localized (AHL) Family AT3G04590 55.623 1.14e-95 288
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral2018g00059 - - gmx:100809675 460.685