Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral2018g00050 ATGGCGAAGACAGGCGTCTCTGAAAACGACTCAACTTCGTTTCCCCATGCAAAGGCTTTGGACTTGAAGCACAAACTGCGGGGGCTCATCAATATTATCCTGGACGCCGACGATTTCCCGCTTGCCAGACTTGACGAAGCTATTACAACTCTTTCTGCTCTCAAGGATTTGAAATGTAAATCTACCGGCTCCTTCCCTCAGAAGTTCGATGATTTGTCTATTCCCCCGGAATTTCGATGCCCCATATCTCTAGCTCTAATGAATGATCCTGTTGTCCTGGCCACCGGACAGACTTATGATCGGCCATTTATCCAAAGATGGTTAAATGAAGGCCACAGGACATGCCCTCAAACCCAGCAAGTCCTTTCTCACTCTATCCTTACTCCAAATCATCTGGTCCGTGACATGATTTCACATTGGTGCAGAGAGAATGGAGTTGAGTCGCCTAAGCTTGTTCGGGATACTGATGAAGAAGTAATAACTGGTGCAGACAGAAGCCATTTAAATTCATTGCTCAAGAAGTTGTCAATGTCTATTTCTGATCAGAAAGCAGCTGCAAAAGAGCTCCGGCTATTAACAAAGCGAATGCCCTCATTTCGAATCCTTTTTAATGAGTCCAGTGATGTGATGTTGCAGTTGCTCAGTCCATTGTCACCTGGTACGGCTTGTGTCCCTCCTGACCTTCACGAGGACTTGATCACTACTGTTCTAAATCTCTCAATTCATGATGATAATAAGAAAATGTTTGCTGAGAGTCCTACGGTCATCCCTCTGCTGATTGAGTCCTTGAAATTTGGAACCATCCAAGCAAGAAGTAATGCTGCGGCAGCTATTTTCACATTATCAGCACTTGATTCCAACAAGGGCATCATTGGAAATTCTGGGGCCATCAAACATTTAATTGAGCTTTTGGAGGAGGGACATCCACTGGCCATGAAAGATGCTGCTTCTGCTATTTTCAACCTATGTTTGGTTCATGAAAATAAAGGAAGAACTGTTGGAGAAAGAGCTGTTCCGGTTATCCTTGACAAGATCATGGACCGTGTTCTAGTTGATGAGTTGTTGGCTATTCTGGCACTCCTGTCTAGCCATCCAAAGGCTGCTGAAGAAATGAGCGATCTTGGTGCTGTCCCCTTGTTGCTCAGTATTATGCGGGAGAGCACATCCGAAAGCTGCAAGGAAAATTGTGTTGCAATCCTATACACAATCTGTCTTACTGATAGAACAAAATGGAAGGAAATTAGAGAAGAAGAAAAAGCCAGGGGCACGCTTTCCGAGCTCGCACAATGTGGGACTTCAAGGGCCAAAAGGAAGGCTAGTGGGATTCTTCAGAGGCTCCATAGATCTCCCACGTTAACACACACGGCTTAG 1371 0.4508 MAKTGVSENDSTSFPHAKALDLKHKLRGLINIILDADDFPLARLDEAITTLSALKDLKCKSTGSFPQKFDDLSIPPEFRCPISLALMNDPVVLATGQTYDRPFIQRWLNEGHRTCPQTQQVLSHSILTPNHLVRDMISHWCRENGVESPKLVRDTDEEVITGADRSHLNSLLKKLSMSISDQKAAAKELRLLTKRMPSFRILFNESSDVMLQLLSPLSPGTACVPPDLHEDLITTVLNLSIHDDNKKMFAESPTVIPLLIESLKFGTIQARSNAAAAIFTLSALDSNKGIIGNSGAIKHLIELLEEGHPLAMKDAASAIFNLCLVHENKGRTVGERAVPVILDKIMDRVLVDELLAILALLSSHPKAAEEMSDLGAVPLLLSIMRESTSESCKENCVAILYTICLTDRTKWKEIREEEKARGTLSELAQCGTSRAKRKASGILQRLHRSPTLTHTA 456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral2018g00050 456 ProSiteProfiles U-box domain profile. 73 147 IPR003613 GO:0004842|GO:0016567
Pral2018g00050 456 Pfam U-box domain 74 144 IPR003613 GO:0004842|GO:0016567
Pral2018g00050 456 SUPERFAMILY RING/U-box 70 149 - -
Pral2018g00050 456 FunFam RING-type E3 ubiquitin transferase 351 452 - -
Pral2018g00050 456 PANTHER U BOX DOMAIN-CONTAINING 42 446 - -
Pral2018g00050 456 CDD RING-Ubox_PUB 75 127 IPR045210 -
Pral2018g00050 456 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 71 147 IPR013083 -
Pral2018g00050 456 SMART Ubox_2 77 140 IPR003613 GO:0004842|GO:0016567
Pral2018g00050 456 Gene3D - 166 454 IPR011989 -
Pral2018g00050 456 FunFam RING-type E3 ubiquitin transferase 73 147 - -
Pral2018g00050 456 SMART arm_5 284 324 IPR000225 GO:0005515
Pral2018g00050 456 SMART arm_5 364 405 IPR000225 GO:0005515
Pral2018g00050 456 SMART arm_5 242 283 IPR000225 GO:0005515
Pral2018g00050 456 SUPERFAMILY ARM repeat 169 449 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral2018g00050 Pral-Chr2018 221976 224593 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral2018g00050 136 456 U-box Gene Family AT3G07360 57.273 6.98e-120 351
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral2018g00050 - - gmx:100806619 612.453