Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral2018g00042 ATGCATGCATTTGCATATGAACAGAGCATCCGCGAGAGGAGGAGGGCTGGAAGGGGAAGGAGAAGGAAGAGCGCTGAAATCTGCCCACATTTCGCTCCTTCCCTCTCAGACTTGTTCCCAATTCGCTCCAAAATTCCTATCGTCAACGGCATATATAGCATTGAACGCACTAGTTTGCTTGTTTTTCTAATAATAATAACACGAGAAATAAAGTCTCACAATTATCATGCTGCGGTTTTTGGGAAGGCAGATAATGGAAACCCAGGTCAGAGCCCAAGCATTCAGGCGCAAGCATTCACTTTCCGCGAGCTAGCAACCGCCACCAAGAATTTCAGGCAGGAATGCCTGCTGGGTGAAGGTGGATTTGGACGAGTGTACAAGGGCACCATTCCGGCAACCGGCAAGGTGGTAGCTGTGAAGCAGTTGGACCGAAATGGGATGAATGGCAGCAAGGATTTTCTGACAGAGGTTGCGGTTTTGAGTCGCCTCAACCATGAAAACCTGGTGAATCTAGTTGGTTATTGTGCCGATGGGGACCAGCGTCTTCTGGTGTATGAATACATGTCGGGGGGCTCTCTATGTGATCGTCTTTTTGAGCCAGAGGAAGGCAAGTCTCCATTGGATTGGTTCAACAGAATGAAAATAGCGTCGGGAGCAGCCAGAGGACTAGAGTATTTGCATGACAAGGCCAATCCACCGGTTGTCTACAGGGACTTGAAATCCTCGAATATCTTGCTGGATGATAATCTTAACCCCAAACTATCTGATTTTGGGCTCAACAAGCTTTCCGGGGGAGACAGGTCAAATCTTATATCCCCCGGAGTTACAGGTACTTACGGCTACTCTGCTCCCGAGTACATCAGGACCGGACACCTCACCTTGAAATCAGACGTCTACGGTTTTGGAGTTGTGCTGCTGGAGCTCATCACCGGACGACGAGCCATTGATACTACCAAACCCAATGAGGAGCAAAATTTAGTTTCATGGGCACAACCCTTATTCAGAAATCCAAAACAATTCCCAGACATGGCGGATCCGCTACTGAAGAAGCATTTCCCGGAAAAGGATCTGAATCAAGCTGTGGCAGTAGCGGCCATGTGCCTCCAAGAGGAAGAAGGGGCGAGGCCTTTGATGAGCGACGTAGTAACTGCTCTGAGTTTCCTGTCCATGGTTCCACCGGAAGTAATTCCTGCATCGCTGTCGCCGGCCACCTTGCCCCCGCAGGATGATGGCTCCGAAGAGGAAGAGGAAGAGGAGGAGGAGGAGGAGGATGAGGAGGAGGAGCCCGATTCTGATGAGACGGGGGGGAAATCAAGCCGCAGCAGCAGCGTGAGTTGGGAAGAGGGAAGCGTGACATCCAGCAAGAAATCGCGAAATTTAAGCAAGAAGAAAAGTAGCTCCAGAGATTTGAAGCAGAAGAGCAGCAAGAAGGGTGGAGGAAAAGTGTCGAGCAGAAAGAGCAGCAGACAATCATCGAGAAGCAGGAAGATGAGCACGGAACGGGAGGAAGGAATGCATGAGAGAGGGAGCAGCAGGATGTCTCAAAGAGACATGTCATTTGGGCTCACCAGCAGCGGCGGCGACGACAGTGACGGGGGCTCACAGGAAGGGGCCCACCAGCGGTTGCAGCACGCCCATACCGCCAAACAACCTCATAAGGATCCCCACAGGGAACGACTCACCGCTTCCAGCGCCCGAGTCTAA 1704 0.5135 MHAFAYEQSIRERRRAGRGRRRKSAEICPHFAPSLSDLFPIRSKIPIVNGIYSIERTSLLVFLIIITREIKSHNYHAAVFGKADNGNPGQSPSIQAQAFTFRELATATKNFRQECLLGEGGFGRVYKGTIPATGKVVAVKQLDRNGMNGSKDFLTEVAVLSRLNHENLVNLVGYCADGDQRLLVYEYMSGGSLCDRLFEPEEGKSPLDWFNRMKIASGAARGLEYLHDKANPPVVYRDLKSSNILLDDNLNPKLSDFGLNKLSGGDRSNLISPGVTGTYGYSAPEYIRTGHLTLKSDVYGFGVVLLELITGRRAIDTTKPNEEQNLVSWAQPLFRNPKQFPDMADPLLKKHFPEKDLNQAVAVAAMCLQEEEGARPLMSDVVTALSFLSMVPPEVIPASLSPATLPPQDDGSEEEEEEEEEEEDEEEEPDSDETGGKSSRSSSVSWEEGSVTSSKKSRNLSKKKSSSRDLKQKSSKKGGGKVSSRKSSRQSSRSRKMSTEREEGMHERGSSRMSQRDMSFGLTSSGGDDSDGGSQEGAHQRLQHAHTAKQPHKDPHRERLTASSARV 567
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral2018g00042 567 Gene3D Transferase(Phosphotransferase) domain 1 188 391 - -
Pral2018g00042 567 PANTHER OS07G0668900 PROTEIN 85 391 - -
Pral2018g00042 567 MobiDBLite consensus disorder prediction 493 513 - -
Pral2018g00042 567 FunFam Serine/threonine-protein kinase PBS1 188 398 - -
Pral2018g00042 567 SMART serkin_6 111 388 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral2018g00042 567 MobiDBLite consensus disorder prediction 409 432 - -
Pral2018g00042 567 MobiDBLite consensus disorder prediction 547 567 - -
Pral2018g00042 567 MobiDBLite consensus disorder prediction 478 492 - -
Pral2018g00042 567 CDD STKc_IRAK 117 385 - -
Pral2018g00042 567 FunFam probable serine/threonine-protein kinase RLCKVII 83 187 - -
Pral2018g00042 567 MobiDBLite consensus disorder prediction 436 456 - -
Pral2018g00042 567 ProSitePatterns Protein kinases ATP-binding region signature. 117 140 IPR017441 GO:0005524
Pral2018g00042 567 Gene3D Phosphorylase Kinase; domain 1 84 187 - -
Pral2018g00042 567 SUPERFAMILY Protein kinase-like (PK-like) 90 390 IPR011009 -
Pral2018g00042 567 MobiDBLite consensus disorder prediction 514 541 - -
Pral2018g00042 567 Coils Coil 408 428 - -
Pral2018g00042 567 ProSitePatterns Serine/Threonine protein kinases active-site signature. 234 246 IPR008271 GO:0004672|GO:0006468
Pral2018g00042 567 ProSiteProfiles Protein kinase domain profile. 111 388 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral2018g00042 567 MobiDBLite consensus disorder prediction 398 567 - -
Pral2018g00042 567 Pfam Protein kinase domain 113 382 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral2018g00042 Pral-Chr2018 199390 201786 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral2018g00042 93 423 Glycoside Hydrolase AT3G07070 66.265 4.06e-153 444
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Pral2018g00042 Pkinase 4.1e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral2018g00042 - - pcin:129308805 758.444