LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pral2018g00033	ATGGGAGAAGGCGCAGAGTTTCACGACTTTCGTGGATCGCCGGATAAACGGAGCATCGCAGAGAGAAGGGGCTTCGGCTCCGGTGCCGGCAGAATCAATACGCCCTGCTTTCGCACCGCTAGCCCACTTGCTTCGCCGGCAGTTCTTTCCCCCCGTGTCACTATACCCCCCGGTATTAGTCCCACGGCCTTGCTTGACTCTCCCATCATGCTTCCTAATTCTCAGGCAATGCCATCTCCCACCACCGGAAATTTTCTGCTGCCTCCTCTCACTCAGCAGGGATCACTTTTCACTTCCGCCCCTCTCGATGCTGGCCCTGGCTTCGCTTCCTCTGCCAATGTCAAGCCCCAAATCAATGCCAACCCTTTTCCTGCCTCCTCTGTTTCCGAAATTCAGGTCTCTAACCATTGCATTATGGCAAAGGGAGGAATTTCAGATTGCCAGCCAATTGTGCCTGATACAACACTGGATTTTTCAATTCCAGCAGAGTTTCCGAAAGGACATAAAGTGAAAAGTGACGTACATTCTTATGATGATGTGAAAATTATACAAGATGCAGCTTATGACGCTAACAATCTTGAGATGCAAATGCGTCGTTCTGAGGAAGTTGCTGACAAAAGCTTTCTACCTAGAAAAGCTAACAAGGATGTTGGACAGGATAATCTTACAGAAGACAAGAGAGATGCATCCTATTTGGTGGGAATGGTAAGGACCTCAGAGGATGGATACAATTGGAGAAAATATGGACAGAAGCAGGTTAAAGGTAGTGAATATCCTAGGAGCTATTATAAATGTACCCATCCTAACTGTCAGGTCAAGAAAAAGGTGGAACGATCTCTTGATGGCCAAATAACTGAGATTATCTACAAGGGTACTCATAATCATGGGAAACCTCAACCTAGTCGCCGACCATCACTGGGCACAGCACTTTCTACTGATGAGGTGTTAGACGGGGAAGGTGGCCGAAACTTTGTTAAAGCTGACGGTGGTTGGAGGAACATTCACTCAGGGATGAAGGATATAAAACAAAATTTGGATTGGAAGGCTGATAATCAGGAAAGGACATCATCAACTTCTGTTGTAACCGAACTCTCAGATCTCGTATCAACTAACAAGGGTAAACCTATCAACATGTTTGAGTCAGAGGACACTCCAGAGCTTTCTTCTACACTTGCTAGTCAAGATGATGATGAAGAAGGAGCAACTCAAGGAAGCATATCACTTGAAGAGGATGCAGATGATGAAGAACCTGAGTCAAAAAGTAGGAAGAAAGAGAGCTGCTTGATTGAATCAAATTTTGCTTCTAGGGCTGTCCGTGAGCCAAGGGTAGTTGTCCAAATTGAGAGTGAGGTGGACATACTTGATGATGGTTATCGCTGGCGAAAGTATGGACAGAAAGTTGTCAAAGGAAATCCAAACCCTAGGAGCTACTACAAATGCACAAGTGCTGGGTGTCTTGTGAGGAAACATGTGGAAAGGGCTTCACACGATCTCAAATTTGTAATAACTGCTTATGAGGGTAAACACAACCATGAAGTGCCCACCGCCAGAAGCAGCAATCAAATGAGCTCGAGTGGTGCCTGTATGCTTTCAAGTGCAGCCACTACACAAGCGGCTCTTGCACCACCTGGGAGTGTCAGTATTCGAAAGCCGGAAAATCAAGTTCAAAACACTGCATCTCATTTTGATAGGAAGCCCGGTTTTATTGGAGGTTTCGGCGATGCGATGAAATTCGGGTCTTCCTCCTTATGTCAGATGAAGTATACTCCCTTGAGCAATACCTTGACTTACGGCTCTTGTGCTACTGCTCAACCCTGTTCTATGACCTCTGTGTTCCCTGACTTTCCAGTGTCACTACCGTTGAACCTTCCCTCATCTGGAGGTTTTCCTCCGGCTGGACTCAATCTCAATTGTGCAAGACCTGTGTCTTTTCTTTCAGGGCAGCTGCTTAAGGAGGTCGATACAGGTTTCCTGAGGCCTAAACAGGAGCATGAAGATGCTATTATCTATGATGCCTGCATGCCCATCGCTGATCATGCCACTGCTTCCCTCACTCCATCGTCGACATCCACTTCAGTGTATAATCGGGTCGTGCACGGTTTCCCTCCATAA	2112	0.4659	MGEGAEFHDFRGSPDKRSIAERRGFGSGAGRINTPCFRTASPLASPAVLSPRVTIPPGISPTALLDSPIMLPNSQAMPSPTTGNFLLPPLTQQGSLFTSAPLDAGPGFASSANVKPQINANPFPASSVSEIQVSNHCIMAKGGISDCQPIVPDTTLDFSIPAEFPKGHKVKSDVHSYDDVKIIQDAAYDANNLEMQMRRSEEVADKSFLPRKANKDVGQDNLTEDKRDASYLVGMVRTSEDGYNWRKYGQKQVKGSEYPRSYYKCTHPNCQVKKKVERSLDGQITEIIYKGTHNHGKPQPSRRPSLGTALSTDEVLDGEGGRNFVKADGGWRNIHSGMKDIKQNLDWKADNQERTSSTSVVTELSDLVSTNKGKPINMFESEDTPELSSTLASQDDDEEGATQGSISLEEDADDEEPESKSRKKESCLIESNFASRAVREPRVVVQIESEVDILDDGYRWRKYGQKVVKGNPNPRSYYKCTSAGCLVRKHVERASHDLKFVITAYEGKHNHEVPTARSSNQMSSSGACMLSSAATTQAALAPPGSVSIRKPENQVQNTASHFDRKPGFIGGFGDAMKFGSSSLCQMKYTPLSNTLTYGSCATAQPCSMTSVFPDFPVSLPLNLPSSGGFPPAGLNLNCARPVSFLSGQLLKEVDTGFLRPKQEHEDAIIYDACMPIADHATASLTPSSTSTSVYNRVVHGFPP	703

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pral2018g00033	703	SUPERFAMILY	WRKY DNA-binding domain	447	514	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Pral2018g00033	703	Gene3D	WRKY domain	441	507	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Pral2018g00033	703	PANTHER	WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED	192	538	IPR044810	GO:0003700
	Pral2018g00033	703	MobiDBLite	consensus disorder prediction	1	22	-	-
	Pral2018g00033	703	SMART	WRKY_cls	239	297	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Pral2018g00033	703	SMART	WRKY_cls	454	513	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Pral2018g00033	703	MobiDBLite	consensus disorder prediction	1	27	-	-
	Pral2018g00033	703	FunFam	WRKY transcription factor	227	299	-	-
	Pral2018g00033	703	FunFam	WRKY transcription factor 33	441	507	-	-
	Pral2018g00033	703	Gene3D	WRKY domain	232	299	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Pral2018g00033	703	Pfam	WRKY DNA -binding domain	455	512	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Pral2018g00033	703	Pfam	WRKY DNA -binding domain	240	295	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Pral2018g00033	703	MobiDBLite	consensus disorder prediction	371	426	-	-
	Pral2018g00033	703	ProSiteProfiles	WRKY domain profile.	449	514	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Pral2018g00033	703	MobiDBLite	consensus disorder prediction	371	401	-	-
	Pral2018g00033	703	SUPERFAMILY	WRKY DNA-binding domain	237	298	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Pral2018g00033	703	ProSiteProfiles	WRKY domain profile.	234	298	IPR003657	GO:0003700\|GO:0006355\|GO:0043565

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pral2018g00033	Pral-Chr2018	168035	172229	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pral2018g00033	453	557	WRKY Transcription Factor Family	AT4G26640	40.187	9.26e-15	75.9

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	WRKY	Pral2018g00033		WRKY	6e-24	CL0274