Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral2017g00009 ATGGAGGATATCATTCAAGAGGAAGTTATGGTGGCGTGCAAGGATCAGGCACAAATCATGAAGGGCAAGCGTACCAAGCGTCAAAGGGCACCATCCCCACTAAGGCTAGCCATAGCCATGCCTTGCGCAACAGCCAGCAGCAATGAGATCTGTTCCGGCGGGTCCGACGTCGCAAACACGTCCTCATCTGAATTGAGGGACAGCACGCCGTCAACGACGATGCAGACGGAGGAAGAGGAGGACATGGCCAATTGTTTGATTCTTTTGGCTCAAGGCAAATTCTCGCACCCCGTGGGTGTGCCCAAGGATGGGGCACACCTTTACCAGTGCAAGACTTGTGACCGAGGCTTCCCTTCATTCCGAGCGCTTGGAGGACACAGAGCCAGACACAAGAAGACGAAGCCCAACCCGGAAGACAGTAACCATGTTGGTTGCGACGATTACTGTACCGGCACTGCTCTCTCCTTGCAATTATCAAGTAGCAAGGTTTCTTCGTATAACGGTAACAAATCATCGTCCAAAGTTCATGAATGTTCCATTTGTGGGGCTGAGTTCTCTTCCGGGCAAGCCTTGGGGGGTCACATGAGAAGGCATAGAACCTTGGTGAACGCTTCAGCAACTACCACTATCACCAGCAGCCCCGAGGTCCGGAAACCCAGAAACGTCTTCAAGTTGGACTTGAATCTTCCTGCGCCTGATGAAGATCATGATCATCGCGCTGAATCCAAGTTTCCCTTTCACTCCAAAGACTCTGTCCTCGTCTTCTCGGCGTCTCCTTTGGTGGATTGTCCTTACTGA 798 0.5201 MEDIIQEEVMVACKDQAQIMKGKRTKRQRAPSPLRLAIAMPCATASSNEICSGGSDVANTSSSELRDSTPSTTMQTEEEEDMANCLILLAQGKFSHPVGVPKDGAHLYQCKTCDRGFPSFRALGGHRARHKKTKPNPEDSNHVGCDDYCTGTALSLQLSSSKVSSYNGNKSSSKVHECSICGAEFSSGQALGGHMRRHRTLVNASATTTITSSPEVRKPRNVFKLDLNLPAPDEDHDHRAESKFPFHSKDSVLVFSASPLVDCPY 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral2017g00009 265 MobiDBLite consensus disorder prediction 54 77 - -
Pral2017g00009 265 SUPERFAMILY beta-beta-alpha zinc fingers 107 198 IPR036236 -
Pral2017g00009 265 ProSiteProfiles Zinc finger C2H2 type domain profile. 108 135 IPR013087 -
Pral2017g00009 265 PANTHER ZINC FINGER PROTEIN ZAT5 29 246 - -
Pral2017g00009 265 ProSitePatterns Zinc finger C2H2 type domain signature. 110 130 IPR013087 -
Pral2017g00009 265 ProSitePatterns Zinc finger C2H2 type domain signature. 178 198 IPR013087 -
Pral2017g00009 265 SMART c2h2final6 108 130 IPR013087 -
Pral2017g00009 265 SMART c2h2final6 176 198 IPR013087 -
Pral2017g00009 265 ProSiteProfiles Zinc finger C2H2 type domain profile. 176 198 IPR013087 -
Pral2017g00009 265 Gene3D Classic Zinc Finger 106 198 - -
Pral2017g00009 265 Pfam C2H2-type zinc finger 175 199 - -
Pral2017g00009 265 Pfam C2H2-type zinc finger 108 132 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral2017g00009 Pral-Chr2017 43611 44790 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral2017g00009 19 265 C2H2 Transcription Factor Family AT5G03510 43.729 9.54e-58 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pral2017g00009 zf-C2H2_6 1e-12 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral2017g00009 - - pcin:129295621 408.683