Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral2006g00012 ATGGAAGGAGGTTTAGGCCAAAACTCTGTTCCTTCATCAAGTTCTTCTGACAAGTCCATGATTTTGGATGTTAAACCTCTGCGTTGCTTGCTACCAATTTTCCCGATGTCATCTCAAGGTCCTTCTTCTGGCCAGTATCCTTCTGGGTTTGCTCCTTTCTTCCCCTTTGGTGGACCTCAAGAATCTCATGCATGGACTGATCTTAACCAGCATGCTCCTCCTTCTGGAGATGTTCCGATGCCTACTCCAATCCGAACAGTCAGAAGCCCTTTAGATTCTATTCCATCAAAACGTGGAGCACCGCATGGGAGCAGCTCAAAATCATCCCAAAGAAAGACTAAGAAGAGCCAAGAATCACAAATGGATTTATGTTCTATAGTTGGTATTAGCCCTGACCAGCAAACTGATGGTGACCGGGAAGTGGTTAATCTTGTGCTCAGGGAGTTTGATGCGCTTCGAAGAAGAATTAGCCAGCTTGAAGATGCCAAGCGTGGAGATTTAAGAGCTGGCAATATATTGATGACCGAAGGCGTTCGAACAAACATGACGAAGAGAGTAGGTGTCGTTCCTGGGGTTGAGATTGGGGACATTTTCTATTTCAGAATGGAATTATGTGTTGTGGGGCTACATGCTCAGTCCATGGGTGGGATTGACTCCATGACCATCAAGGGTGGGTTTGAGGATGAACCTTTGGCTCTAAGTATTGTCTCATCATATGAATATGATGACCATGCAGATGATGATGATGTTTTAATTTATAGTGGACAGAGTGGGAACTTTGGCAAGAGAGACACGGTGGCGGCTGATCAGAAGCTTCAAGGGGGCAATCTTGCTCTGGAAAGGAGTTCACGACGGCACAATGAAGTGAGAGTCATCCGGGGCATGAAAGATCCTGCTGCTCCAAATGCAAAAATCTATGTCTATGATGGTCTGTACAAAATTCAAGATTCATGGATAGAAAAGGGGAAACATGGCAGTGGTGTATTCAAGTACAAGTTGGTGAGAGTGCCCGGACAGCTTAGTGCTTTTTCTGTTTGGAAATCAGTTCAGAAGTGGAAGACAGACTGTTCTTCAAGGACTGGACTTACTCTTTCAGATCTGTCTTCAGGAGCTGAGAGTATTCCAGTATCACTTGTCAATGATGTTGATCATGAGAGATTGCCTGGTGGTTTCACTTATTTTCATTCCCTTAGATATTCTAAACCATTCAGCTTAATGCAGTCTTCTGATGGCTGCAACTGTACAAAAACATGTGTCCCTGGTGATCTGAATTGCTCTTGTATTCGGAGAAATGAAGGCGACTTTCCATATATTGGCAATGGCATTCTAGTAAGTCGTAAGCCATTAATTCATGAATGTGGCCCTACCTGTCGTTGTTTTCCTAACTGCAAAAATCGAGTGTCCCAATTGGGTTTAAGGCACTCCTTGGAAGTATTCAAAACTAGGGACAGAGGATGGGGCCTTCGATCATTGGATCCTATTCGTGCTGGTTCTTTTATTTGTGAATATGCTGGAGAAGTTATTGACAAAGGAAACTTAAATCAAAACGAGGAGCTAGCAATTAAAGATGAGTATGCTTTTAATACTAACCGTATTTATCCTCCATTTAAGTGGAATCATACGCCTCAGTTATTTGAAGGAGTGGATTCAGATGATCCTAGTGAGGATTATGATATTCCATCTCCTCTAGTTATAAGTGCTAAAGAGTTCGGAAATGTGGCTAGATTCATGAATCATAGCTGTTCCCCAAATGTTTTCTGGCAGCCAGTTGTTTATGAAGAAAATAATCAATCCTTCCTTCATATTGCATTTTTCTCTCTCAGACACATTCCACCAATGACAGAGTTGACGTACGATTATGGGGTTTCCCGTTCTGATCATACTGAGGGTAGAGGAATGCCCGGAGGTCGGAAAAAATGCTTATGTGGATCATCAAAGTGCCGAGGTTCTTTTGGTTGA 1959 0.4288 MEGGLGQNSVPSSSSSDKSMILDVKPLRCLLPIFPMSSQGPSSGQYPSGFAPFFPFGGPQESHAWTDLNQHAPPSGDVPMPTPIRTVRSPLDSIPSKRGAPHGSSSKSSQRKTKKSQESQMDLCSIVGISPDQQTDGDREVVNLVLREFDALRRRISQLEDAKRGDLRAGNILMTEGVRTNMTKRVGVVPGVEIGDIFYFRMELCVVGLHAQSMGGIDSMTIKGGFEDEPLALSIVSSYEYDDHADDDDVLIYSGQSGNFGKRDTVAADQKLQGGNLALERSSRRHNEVRVIRGMKDPAAPNAKIYVYDGLYKIQDSWIEKGKHGSGVFKYKLVRVPGQLSAFSVWKSVQKWKTDCSSRTGLTLSDLSSGAESIPVSLVNDVDHERLPGGFTYFHSLRYSKPFSLMQSSDGCNCTKTCVPGDLNCSCIRRNEGDFPYIGNGILVSRKPLIHECGPTCRCFPNCKNRVSQLGLRHSLEVFKTRDRGWGLRSLDPIRAGSFICEYAGEVIDKGNLNQNEELAIKDEYAFNTNRIYPPFKWNHTPQLFEGVDSDDPSEDYDIPSPLVISAKEFGNVARFMNHSCSPNVFWQPVVYEENNQSFLHIAFFSLRHIPPMTELTYDYGVSRSDHTEGRGMPGGRKKCLCGSSKCRGSFG 652
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral2006g00012 652 ProSiteProfiles SET domain profile. 474 621 IPR001214 GO:0005515
Pral2006g00012 652 SMART set_7 474 627 IPR001214 GO:0005515
Pral2006g00012 652 ProSiteProfiles Pre-SET domain profile. 410 471 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Pral2006g00012 652 Pfam Pre-SET motif 368 466 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Pral2006g00012 652 Gene3D - 170 355 IPR036987 -
Pral2006g00012 652 SUPERFAMILY SET domain 373 649 IPR046341 -
Pral2006g00012 652 Pfam SAD/SRA domain 186 339 IPR003105 -
Pral2006g00012 652 Pfam SET domain 485 621 IPR001214 GO:0005515
Pral2006g00012 652 SUPERFAMILY PUA domain-like 169 357 IPR015947 -
Pral2006g00012 652 SMART G9a_1 182 339 IPR003105 -
Pral2006g00012 652 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 1 652 IPR025794 GO:0016571
Pral2006g00012 652 SMART preset_2 364 458 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Pral2006g00012 652 Coils Coil 142 162 - -
Pral2006g00012 652 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 91 646 - -
Pral2006g00012 652 ProSiteProfiles YDG domain profile. 187 335 IPR003105 -
Pral2006g00012 652 MobiDBLite consensus disorder prediction 61 120 - -
Pral2006g00012 652 FunFam Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH5 170 354 - -
Pral2006g00012 652 ProSiteProfiles Post-SET domain profile. 636 652 IPR003616 -
Pral2006g00012 652 Gene3D SET domain 356 651 IPR046341 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral2006g00012 Pral-Chr2006 63087 66672 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral2006g00012 1 652 Su(var)3-9 homologs AT1G73100 53.176 0.0 713
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Pral2006g00012 SAD_SRA 7.4e-47 CL0178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral2006g00012 K24405 - gmx:100812173 870.537