Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral2006g00008 ATGAGTCGAATGATCAATGAGATTGAAGACGGGGAACTCCCCTGTGATCAGAATGGACCACAGTTGAATGATGAGTGTAATGGAGGAAGTGCCAGTGGAGTTATTCTGAAGAAAGGTCCATGGACATCTGCTGAAGATGCTATCTTGGTGGACTATGTTAAGAAGCATGGGGAAGGGAACTGGAATGCTGTTCAGAAGCACTCAGGTCTGTCCCGATGCGGCAAAAGCTGCCGACTGCGGTGGGCAAATCACCTAAGGCCAAATTTAAAGAAAGGAGCTTTTACTCCAGAAGAAGAGCGGTTGATTGCTGAACTCCATGCCAAGATGGGAAACAAATGGGCACGGATGGCTGCACATCTGCCTGGTCGTACTGATAATGAGATAAAGAACTACTGGAATACTCGTATAAAGCGGCGTCAGCGGGCTGGCTTGCCTCTATATCCTCCTGAAGTGTGTTTGCAAGAATCAAAAGAGAGTCAACAAGGCCGAAGCACTGCTGGAAAAATTGGAGATAGCGGACATAATGATTTTCTGCAGGAAAACAGTTATCAGAAACATGATACTCTATTTGGCAGTCTGAATGCCAATCAGGGAGGCTTTCCTTATTTGCCAGAGATTCCTGACATTTCTGCTGATAATATCCTGCTGAAAGGTCTTGGTTCTTCCCAGCATTGTAATTTTATGCCATCAACATTACCTTACCTTAAGCGCTTTCATGATTCAACAATGCCATTCCTTAGTTCATCTGATGTGGCCAGAAATGGGTTTTATCCTTTACACCATATTCAAGATTATACTTATGATAAGATTGTGCAATCAATTGGATACCATTCTCCCCTTGATCCTGGCCCCTCTTCACAGAACTCACTGTGTTACAGCCATTCGCTTTCAAATGGCAATTCCTCTACTTCAAAGCCAACTTTTGAGGCTTTGAAGCTGGAGCTCCCTTCACTCCAATATCCAGAAACTGATCTAGGCAGCTGGGGCGCATCTCCTCCGCCTTCTTTGCTAGAGCCAGCTGATGTTTTCACAGGTACTCCCCTGCCAACTAGTTTACTGGAGTCAGATTCTTCTTCACCGTATAACAGTGGCCTCCTGGAAGCTTTACTTCATCAGTCCAAGAATCTGAGCCGTTCAAAGAACCATTGCTCTGACAAGAGTTCAAATTCATCCACTGCTACCCCTGGTGAGAGAGCCGACAGTTCCACTTTGTACGTGTATGAGACAGAATGTGAAGATTATGCAGACTGTGTTTCTCCATTTGGTGCAACTTCAATATTGAATGAATGTCTTGCTGTTAGTGCCAACGGAAATTCATTTGATGAACTGCAACCACAGACCTTAAATGAAAAGGCTCTGAAATCAGAATCTGCTTACCAGGCTTTGACCCCCAATAGTGAAGATCAAGACATGTCTATGTTGAATATTCCCCAACCAGACGCTTTGCTTGCTTCAGATTGGTATGAGCAAGCCCCTGCATTAATCAATAATCATGCCGACACGAACGATTCCATAGCAACCCTCATCAGTGGTGATGATGTAGCCACCGACTACAACTACATATCTGCGGAAATCTCATCACCTAGTCAAGTATGGGGTTTGGATTCTTGCACTTGGAATAACATGCCTGGTGTTTGCCAAATGTCTGATCTTCCGTAA 1659 0.4448 MSRMINEIEDGELPCDQNGPQLNDECNGGSASGVILKKGPWTSAEDAILVDYVKKHGEGNWNAVQKHSGLSRCGKSCRLRWANHLRPNLKKGAFTPEEERLIAELHAKMGNKWARMAAHLPGRTDNEIKNYWNTRIKRRQRAGLPLYPPEVCLQESKESQQGRSTAGKIGDSGHNDFLQENSYQKHDTLFGSLNANQGGFPYLPEIPDISADNILLKGLGSSQHCNFMPSTLPYLKRFHDSTMPFLSSSDVARNGFYPLHHIQDYTYDKIVQSIGYHSPLDPGPSSQNSLCYSHSLSNGNSSTSKPTFEALKLELPSLQYPETDLGSWGASPPPSLLEPADVFTGTPLPTSLLESDSSSPYNSGLLEALLHQSKNLSRSKNHCSDKSSNSSTATPGERADSSTLYVYETECEDYADCVSPFGATSILNECLAVSANGNSFDELQPQTLNEKALKSESAYQALTPNSEDQDMSMLNIPQPDALLASDWYEQAPALINNHADTNDSIATLISGDDVATDYNYISAEISSPSQVWGLDSCTWNNMPGVCQMSDLP 552
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral2006g00008 552 Gene3D - 37 90 - -
Pral2006g00008 552 ProSiteProfiles Myb-like domain profile. 36 85 IPR001005 -
Pral2006g00008 552 MobiDBLite consensus disorder prediction 376 400 - -
Pral2006g00008 552 CDD SANT 40 85 IPR001005 -
Pral2006g00008 552 Pfam Myb-like DNA-binding domain 91 134 IPR001005 -
Pral2006g00008 552 Pfam Myb-like DNA-binding domain 38 85 IPR001005 -
Pral2006g00008 552 Gene3D - 93 139 - -
Pral2006g00008 552 FunFam MYB-related transcription factor 37 90 - -
Pral2006g00008 552 SMART sant 37 87 IPR001005 -
Pral2006g00008 552 SMART sant 90 138 IPR001005 -
Pral2006g00008 552 SUPERFAMILY Homeodomain-like 37 132 IPR009057 -
Pral2006g00008 552 MobiDBLite consensus disorder prediction 339 359 - -
Pral2006g00008 552 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 29 520 - -
Pral2006g00008 552 MobiDBLite consensus disorder prediction 155 178 - -
Pral2006g00008 552 CDD SANT 93 134 IPR001005 -
Pral2006g00008 552 ProSiteProfiles Myb-like domain profile. 86 136 IPR001005 -
Pral2006g00008 552 MobiDBLite consensus disorder prediction 376 399 - -
Pral2006g00008 552 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 86 140 IPR017930 -
Pral2006g00008 552 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 33 85 IPR017930 -
Pral2006g00008 552 FunFam Transcription factor GAMYB 93 139 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral2006g00008 Pral-Chr2006 33104 37943 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral2006g00008 33 552 MYB Transcription Factor Family AT5G06100 41.321 1.52e-119 361
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pral2006g00008 Myb_DNA-binding 5.1e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral2006g00008 K09422 - qsa:O6P43_029762 698.353