Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1g00004 ATGGAGCAGAAACACGTTTTGTTGTCAGCATTGAGCGTAGGGGTTGGTCTTGGAGTAGGGATTGGGTTGAGTTCAGGGCAAGTGGTTCAGAAATGGGTTGGAGGGAATCATGCGCTCTGTGGTGAGCAGATTGAGCAGGAACTTTTAAGGCTGGTGATTGATGGCAAGGAATGCAAGGAAACTTTTGAAGAGTTTCCTTATTACTTAAGTGAAAGAACTTGTGAGTTATTGAGGAGTGCTGCATTCGTTCATTTGAAACAACTTCACTTTTCCAAACACACCCGTAATCTTTCACCGGCAAGTAGGGCAATTCTGCTTTCTGGACCAGCAGAGCTTTACCTGCAAATACTTGCCAAGGCTTTAGCTCATCACTTTGAGTCAAAGTTGCTGCTTCTAGATATTGCTGACTTCTCTTTCAAGATGCAAAGCAAATATGGATGTGCAAGAACAGAATCATCCTCTCAAAGGTCTTTATCTAAGGCGGCTCTCGAGCGAGCGTCCAGTTTTTTGGGTTTCTTTTCAGTTTTCCATTCAACTGGAAAAACTAAAGGCACTTTGCACACACATAGTAATAGTACTGGAAGTTCCAATACATCTTCAAAACTTAGCAGGAATGCCTCTGCTGCATCTGATATGAGTAGCACCGCTTCCCAATGTGGTCCAACAAATTCAGGCACCTTGAAGCACATGAGCAGCTTGTGTTTTGATGAAAAACTCTTCCTTCAGTTGCTCTACAAGGTCTTGGTTTCTGTCTCAGGAAAAAGTCCCATCATTTTATACATTAGGGATGCTGAGAAGATTTTCCTCCAATCAGAACGGCTATGCAATTTGTTTCATAAAATGCTTGAAAAACTTTCAGGGCCAGTGTTGGTACTTGGTTCCCAGATAGTAGATGCTGAGGATGAATTCTCAGAAGTTGATGAAAGGCTTGCAACATTATTTCCTTACAACATTGAGATTAAACCACCCGAAGATGAGATTAGTCTTGGAAACTGGAATGCCCAACTTGAAGAGAACATGAAAATAATTCAGTTTCAAGATAACAAAAAGCACATTGCTGAAGTACTTGCAGCAAATGATATTGAATGTAATGACTTGAATTCAATCTGCCGTGCAGACACAATGGTGCTAAGTAATTATATTGAAGAGATTGTAGTATCTGCTATACGTTATCACTTGATGAATACCAAGGATCCAGAATACCGAAATGGGAAGCTAGTAATATCATCTGAGAGTCTGTCCCATGGTTTGAATCTATTTCAAGAAGGCAAAAGAACTGCTGAGGATACCCTAAAGCTGGAAGCTAATGGAAACAAGGGCTCAGCTGGCGGAGAGGGGAATGGTGCAAAAAATGAGGTACGGTCTGACGCTCAAGCACCTGAAAACAAAAGTGAGACAGGGAAATCCATTCCTCTAGCAAAGAGTGATGGAGAGAATTCTGCTCCAAAAGCGTCTGAAGTTCCTCCTGACAATGAGTTTGAGAAGCGAATTAGACCAGAGGTCATCCCTGCAAATGAGATTGGAGTTACATTTGCAGATATTGGTGCATTAGATGAAATTAAAGAGTCACTCCAAGAGCTGGTCATGCTTCCCCTTCGAAGGCCAGATCTCTTCAAAGGTGGACTTCTTAAGCCTTGCAGAGGCATATTGCTCTTTGGACCTCCAGGTACTGGGAAAACAATGCTTGCAAAGGCAATTGCAAATGAAGCTGGAGTAAGCTTTATCAATGTCTCAATGTCTACCATCACTTCAAAATGGTTTGGAGAAGATGAGAAAAATGTTAGAGCTCTGTTCACATTGGCGGCAAAGGTTGCCCCAACTATTATATTTGTTGATGAGGTTGATAGCATGCTTGGGCAGCGAACAAGAGTTGGAGAACATGAGGCTATGAGGAAGATTAAAAATGAATTCATGACGCACTGGGATGGTCTATTGACAAAACCTGGGGAACAAATTCTAGTCCTTGCTGCAACCAACAGGCCAGTTGACCTTGATGAAGCAATCATACGACGGTTTGAGCGAAGAATCATGGTTGGCCTTCCATCAGCTGAGAACAGGGAAATGATCTTGAAGACTCTACTAGCTAAGGAAAAGACTGAAAATTTAGACTTCAAAGAGCTTGCTGTTATGACAGAAGGATACAGTGGAAGTGATCTTAAGAATTTTTGCACAACTGCTGCTTATCGACCTGTTAGGGAGCTCATAAAGCAGGAGAGATTGAAAGACAAGAACAAAAAGGCAGCAGAAAAACAAAACTCAGAGGATGCTTCTGATACTCAGGACGATGGAGAAGAGCAAGTAATTGCCTTGAGGCCTTTAAACATGGAAGACATGAGACAGGCTAAGAGTCAGGTTGCTGCAAGTTTTGCTGCTGAAGGATCAATAATGGCTGAGCTGAAGCAGTGGAATGAGCTATATGGAGAAGGAGGTTCAAGGAAGAAACAGCAACTCACTTACTTCCTATAG 2466 0.4213 MEQKHVLLSALSVGVGLGVGIGLSSGQVVQKWVGGNHALCGEQIEQELLRLVIDGKECKETFEEFPYYLSERTCELLRSAAFVHLKQLHFSKHTRNLSPASRAILLSGPAELYLQILAKALAHHFESKLLLLDIADFSFKMQSKYGCARTESSSQRSLSKAALERASSFLGFFSVFHSTGKTKGTLHTHSNSTGSSNTSSKLSRNASAASDMSSTASQCGPTNSGTLKHMSSLCFDEKLFLQLLYKVLVSVSGKSPIILYIRDAEKIFLQSERLCNLFHKMLEKLSGPVLVLGSQIVDAEDEFSEVDERLATLFPYNIEIKPPEDEISLGNWNAQLEENMKIIQFQDNKKHIAEVLAANDIECNDLNSICRADTMVLSNYIEEIVVSAIRYHLMNTKDPEYRNGKLVISSESLSHGLNLFQEGKRTAEDTLKLEANGNKGSAGGEGNGAKNEVRSDAQAPENKSETGKSIPLAKSDGENSAPKASEVPPDNEFEKRIRPEVIPANEIGVTFADIGALDEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANEAGVSFINVSMSTITSKWFGEDEKNVRALFTLAAKVAPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMTHWDGLLTKPGEQILVLAATNRPVDLDEAIIRRFERRIMVGLPSAENREMILKTLLAKEKTENLDFKELAVMTEGYSGSDLKNFCTTAAYRPVRELIKQERLKDKNKKAAEKQNSEDASDTQDDGEEQVIALRPLNMEDMRQAKSQVAASFAAEGSIMAELKQWNELYGEGGSRKKQQLTYFL 821
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1g00004 821 MobiDBLite consensus disorder prediction 184 204 - -
Pral1g00004 821 MobiDBLite consensus disorder prediction 739 764 - -
Pral1g00004 821 SMART AAA_5 545 682 IPR003593 GO:0016887
Pral1g00004 821 Pfam ATPase family associated with various cellular activities (AAA) 549 679 IPR003959 GO:0005524|GO:0016887
Pral1g00004 821 ProSitePatterns AAA-protein family signature. 652 671 IPR003960 GO:0005524|GO:0016887
Pral1g00004 821 Gene3D - 681 766 - -
Pral1g00004 821 FunFam p-loop nucleoside triphosphate hydrolase superfamily protein 508 683 - -
Pral1g00004 821 MobiDBLite consensus disorder prediction 435 496 - -
Pral1g00004 821 Pfam AAA+ lid domain 701 742 IPR041569 -
Pral1g00004 821 Gene3D - 508 680 IPR027417 -
Pral1g00004 821 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 508 737 IPR027417 -
Pral1g00004 821 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 43 820 - -
Pral1g00004 821 MobiDBLite consensus disorder prediction 739 757 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1g00004 Pral-Chr1 5823 13790 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1g00004 509 751 Calmodulin-binding Proteins AT3G56690 39.271 1.39e-44 172
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1g00004 - - qsa:O6P43_004236 1167.91