Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1g00003 ATGGAGCAGAAACACGTTTTGTTGTCAGCATTGAGCGTAGGGGTTGGTCTTGGAGTAGGGATTGGGTTGAGTTCAGGGCAAGTGGTTCAGAAATGGGTTGGAGGGAATCATGCGCTCTGTGGTGAGCAGATTGAGCAGGAACTTTTAAGGCTGGTGATTGATGGCAAGGAATGCAAGGAAACTTTTGAAGAGTTTCCTTATTACTTAAGTGAAAGAACTTGTGAGTTATTGAGGAGTGCTGCATTCGTTCATTTGAAACAACTTCACTTTTCCAAACACACCCGTAATCTTTCACCGGCAAGTAGGGCAATTCTGCTTTCTGGACCAGCAGAGCTTTACCTGCAAATACTTGCCAAGGCTTTAGCTCATCACTTTGAGTCAAAGTTGCTGCTTCTAGATATTGCTGACTTCTCTTTCAAGATGCAAAGCAAATATGGATGTGCAAGAACAGAATCATCCTCTCAAAGGTCTTTATCTAAGGCGGCTCTCGAGCGAGCGTCCAGTTTTTTGGGTTTCTTTTCAGTTTTCCATTCAACTGGAAAAACTAAAGGCACTTTGCACACACATAGTAATAGTACTGGAAGTTCCAATACATCTTCAAAACTTAGCAGGAATGCCTCTGCTGCATCTGATATGAGTAGCACCGCTTCCCAATGTGGTCCAACAAATTCAGGCACCTTGAAGCACATGAGCAGCTTGTGTTTTGATGAAAAACTCTTCCTTCAGTTGCTCTACAAGGTCTTGGTTTCTGTCTCAGGAAAAAGTCCCATCATTTTATACATTAGGGATGCTGAGAAGATTTTCCTCCAATCAGAACGGCTATGCAATTTGTTTCATAAAATGCTTGAAAAACTTTCAGGGCCAGTGTTGGTACTTGGTTCCCAGATAGTAGATGCTGAGGATGAATTCTCAGAAGTTGATGAAAGGCTTGCAACATTATTTCCTTACAACATTGAGATTAAACCACCCGAAGATGAGATTAGTCTTGGAAACTGGAATGCCCAACTTGAAGAGAACATGAAAATAATTCAGTTTCAAGATAACAAAAAGCACATTGCTGAAGTACTTGCAGCAAATGATATTGAATGTAATGACTTGAATTCAATCTGCCGTGCAGACACAATGGTGCTAAGTAATTATATTGAAGAGATTGTAGTATCTGCTATACGTTATCACTTGATGAATACCAAGGATCCAGAATACCGAAATGGGAAGCTAGTAATATCATCTGAGAGTCTGTCCCATGGTTTGAATCTATTTCAAGAAGGCAAAAGAACTGCTGAGGATACCCTAAAGCTGGAAGCTAATGGAAACAAGGGCTCAGCTGGCGGAGAGGGGAATGGTGCAAAAAATGAGGTACGGTCTGACGCTCAAGCACCTGAAAACAAAAGTGAGACAGGGAAATCCATTCCTCTAGCAAAGAGTGATGGAGAGAATTCTGCTCCAAAAGCGTCTGAAGTTCCTCCTGACAATGAGTTTGAGAAGCGAATTAGACCAGAGGTCATCCCTGCAAATGAGATTGGAGTTACATTTGCAGATATTGGTGCATTAGATGAAATTAAAGAGTCACTCCAAGAGCTGGTCATGCTTCCCCTTCGAAGGCCAGATCTCTTCAAAGGTGGACTTCTTAAGCCTTGCAGAGGCATATTGCTCTTTGGACCTCCAGGTACTGGGAAAACAATGCTTGCAAAGGCAATTGCAAATGAAGCTGGAGTAAGCTTTATCAATGTCTCAATGTCTACCATCACTTCAAAATGGTTTGGAGAAGATGAGAAAAATGTTAGAGCTCTGTTCACATTGGCGGCAAAGGTTGCCCCAACTATTATATTTGTTGATGAGGTTGATAGCATGCTTGGGCAGCGAACAAGAGTTGGAGAACATGAGGCTATGAGGAAGATTAAAAATGAATTCATGACGCACTGGGATGGTCTATTGACAAAACCTGGGGAACAAATTCTAGTCCTTGCTGCAACCAACAGGCCAGTTGACCTTGATGAAGCAATCATACGACGGTTTGAGCGAAGAATCATGGTTGGCCTTCCATCAGCTGAGAACAGGGAAATGATCTTGAAGACTCTACTAGCTAAGGAAAAGACTGAAAATTTAGACTTCAAAGAGCTTGCTGTTATGACAGAAGGATACAGTGGAAGTGATCTTAAGAATTTTTGCACAACTGCTGCTTATCGACCTGTTAGGGAGCTCATAAAGCAGGAGAGATTGAAAGACAAGGTAAACAAAAAGGCAGCAGAAAAACAAAACTCAGAGGATGCTTCTGATACTCAGGACGATGGAGAAGAGCAAGTAATTGCCTTGAGGCCTTTAAACATGGAAGACATGAGACAGGCTAAGAGTCAGGTTGCTGCAAGTTTTGCTGCTGAAGGATCAATAATGGCTGAGCTGAAGCAGTGGAATGAGCTATATGGAGAAGGAGGTTCAAGGAAGAAACAGCAACTCACTTACTTCCTATAG 2469 0.4212 MEQKHVLLSALSVGVGLGVGIGLSSGQVVQKWVGGNHALCGEQIEQELLRLVIDGKECKETFEEFPYYLSERTCELLRSAAFVHLKQLHFSKHTRNLSPASRAILLSGPAELYLQILAKALAHHFESKLLLLDIADFSFKMQSKYGCARTESSSQRSLSKAALERASSFLGFFSVFHSTGKTKGTLHTHSNSTGSSNTSSKLSRNASAASDMSSTASQCGPTNSGTLKHMSSLCFDEKLFLQLLYKVLVSVSGKSPIILYIRDAEKIFLQSERLCNLFHKMLEKLSGPVLVLGSQIVDAEDEFSEVDERLATLFPYNIEIKPPEDEISLGNWNAQLEENMKIIQFQDNKKHIAEVLAANDIECNDLNSICRADTMVLSNYIEEIVVSAIRYHLMNTKDPEYRNGKLVISSESLSHGLNLFQEGKRTAEDTLKLEANGNKGSAGGEGNGAKNEVRSDAQAPENKSETGKSIPLAKSDGENSAPKASEVPPDNEFEKRIRPEVIPANEIGVTFADIGALDEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANEAGVSFINVSMSTITSKWFGEDEKNVRALFTLAAKVAPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMTHWDGLLTKPGEQILVLAATNRPVDLDEAIIRRFERRIMVGLPSAENREMILKTLLAKEKTENLDFKELAVMTEGYSGSDLKNFCTTAAYRPVRELIKQERLKDKVNKKAAEKQNSEDASDTQDDGEEQVIALRPLNMEDMRQAKSQVAASFAAEGSIMAELKQWNELYGEGGSRKKQQLTYFL 822
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1g00003 822 MobiDBLite consensus disorder prediction 184 204 - -
Pral1g00003 822 Pfam AAA+ lid domain 701 740 IPR041569 -
Pral1g00003 822 Coils Coil 737 757 - -
Pral1g00003 822 Gene3D - 681 763 - -
Pral1g00003 822 SMART AAA_5 545 682 IPR003593 GO:0016887
Pral1g00003 822 Gene3D - 508 680 IPR027417 -
Pral1g00003 822 MobiDBLite consensus disorder prediction 742 758 - -
Pral1g00003 822 Pfam ATPase family associated with various cellular activities (AAA) 549 679 IPR003959 GO:0005524|GO:0016887
Pral1g00003 822 ProSitePatterns AAA-protein family signature. 652 671 IPR003960 GO:0005524|GO:0016887
Pral1g00003 822 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 43 821 - -
Pral1g00003 822 MobiDBLite consensus disorder prediction 742 765 - -
Pral1g00003 822 FunFam p-loop nucleoside triphosphate hydrolase superfamily protein 508 683 - -
Pral1g00003 822 MobiDBLite consensus disorder prediction 435 496 - -
Pral1g00003 822 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 508 738 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1g00003 Pral-Chr1 5823 13791 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1g00003 509 740 Calmodulin-binding Proteins AT3G56690 39.407 3.34e-43 167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1g00003 - - qsa:O6P43_004236 1166.37