Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1995g00021 ATGAGTTCCTTCTCCATTACACGGAAAAAAACACCCTTTCAAAAGCACAGAGAAGAAGAAGAGGCAAAGAAGAAGAGAGCAGAAGATGAAACTGCACGCTTGTATGCTGAGTTTGTTGAGTCATTTCAAGGTGATAGCACTCCTGGATCAAAGGCTTTTGTTCGAGGAGGAACTATCAATCCCAATGAAAAAATAAAAGCAGATTCTGAAGGTGAAAAGTCCAAAGATGGGGTTTCTGCAAAGAAGGGAAGTAGGTATGTTCCATCTTTTATACCTCCTCCTTTGGCAACCAAGGGAAAAGAAGCTGAGAAGAAAAAAGAGGAGGAGAAGCCTAAGGAGAAGGAGAAAGGCAAGTCGCGGAATATAGATAACTTTATGGAGGAGCTAAAACATGAGCAAGAAATGAGGGAGAGGCGAAACCAAGAACGTGAACATTGGCGTGATGGGCGCAGCACTGAACATTCTAGTATTAGTCGCTTTGATGAATTGCCTGATGATTTTGATCCAAGTGGAAAACTGCCAGGATCATTTGATGATGGTGATCCACAAACTACAAATCTATATGTTGGAAATCTCTCTCCAAAGGTTGATGAAAATTTTCTTCTCCGAACTTTTGGAAGATTTGGACCCATTGCTAGCGTAAAGATAATGTGGCCTAGGACAGAGGAGGAACGACGGCGGCAAAGAAACTGTGGCTTTGTTGCTTTCATGAACAGAGCTGATGGACAGGCTGCTAAAGATGAAATGCAAGGGGTCGTGGTTTATGAGTATGAATTGAAAATTGGCTGGGGTAAGTCTGTTGCTCTCCCATCGCAAGCACTCCCTGCACCTCCACCAGGGCATATGGCCATCAGGAGTAAGGAGGGTGCCACTGTGATCTTGTCTGGTCCATCTGGCCCATCAGGTCCACCGGTAACTTCTGTTTCTAACCAGAACTCTGAACTGGTTCTCACTCCTAATGTTCCCGATATAATGGTTACACCTCCTGAAGATGAGCATCTAAGGCATGTGATTGATACCATGGCTTTGTATGTTTTGGATGGAGGATGTGCTTTTGAGCAAGCCATTATGGAGAGGGGCCGTGGCAATCCTCTTTTCAATTTCTTGTTTGAGCTTGGTTCCAAGGAACATACTTACTATGTTTGGAGACTGTACTCATTTGCTCAGGGTGACACTCTTCAGAGATGGCGGACAGAACCCTTCATTATGATAACTGGCAGTGGAAGATGGATTCCTCCATCATTGCCCTCTACAAAAAGTCCAGAACATGAAAAGGAGTCTGGGTCCACGCATGCTGCAGGGAGAAGCAGGCGTGTGGAACCCGAAAGAACACTGACTGATGCACAAAGGGATGAATTTGAGGATATGCTGCGTGCTTTAACATTAGAGAGGAGTCAAATAAAAGAAGCTATGGGGTTTGCTTTGGACAACGCTGATGCAGCTGGAGAGATAGTTGAAGTTTTAACAGAATCCCTGACACTGAAAGAGACCCCTATTCCAACTAAAGTTGCAAGGCTTATGCTCGTCTCTGATGTGCTTCACAATAGTAGTGCTCCAGTAAGAAATGCTTCTGCATATCGCACCAAGTTTGAAGCAACATTGCCTGACATAATGGAGAGTTTTAATGACTTGTATCGTAGCATAACAGGACGCATTACTGCTGAGGCCCTAAAGGAACGAGTGCTAAAAGTTCTGCAAGTGTGGGCAGATTGGTTTCTCTTTTCTGATGCTTATGTGAATGGCTTACGAGCCACGTTTATTCGTTCTAGCAACTCTGGTGTTACACTATTTCATTCCATATGTGGTGATGCACCTGAAATTGAGAAAAATATGCATTCGGAAGATACAGTTGATGGCAGCAAGAGCAACCAAGACTCTGCATTGGCAATGGGCAGAGGAGCTGCAACGAAGGAGCTAATGTCTCTTCCTCTTGCTGAGCTGGAAAGACGATGTCGACACAATGGATTGTCACTTGTGGGTGGTAGGGAAATGATGGTTGCACGGTTGCTTAGCCTGGAGGAGGCAGAAAAGCAAAGGGGTTATGAGCTAGATGATGAATTGAAATATGCTCAGAACCAAACAAGTTCTGGGAGATATTCAAGTAGCCGGAGAGAAACAAGCACTGAGCCCGAACCAGTTGGTTTCTCTGGATGGGACCACTATGGGGAGGATGATTTACACTCACAAGGCAAAGGCTCAGTGCCACTTGCGCAAACTTTTCCCATTCCACACCCTGAATTGAAAGCCTTCACAAAGAAAGAAAAGAATGATCCAGTGTTACCAGCTTCTAAGTGGGCTCGAGAGGATGATGATAGTGATGATGAACAGAAGGGTCGTGGAAAGGGTTTGGGATTAAGCTACTCATCTTCAGGTAGCGAGAATGCTGGTGATGGTACTACTAAGACAGATGAGCTGGAGTCTGCTGCTGATACGAGCATTTCCGCACCAGCTGATAGTGGAATGAATGAAGAGCAGAGGCAGAAGTTGAGACGCCTAGAAGTTGCTTTAATTGAATACCGGGAGTCTCTTGAAGAGAGGGGAATAAAAAATTTGGAGGAAATTGAGAGAAAAGTCACACTGCACAGGAAACGGTTGCAAGCAGAGTTTGGATTATCAGATTCTGGAGAAGATGGTCAAGGAAGTAGAAGAACATCTTCAGAGAGGAGGGACAGGAGAGATGATTCACATGATGTTTCAAGAAAACGCCACCGTAGTCGTAGCCGAAGTCATAGTCCACAACGAAGATCAGGCAGAGACAGGGAGAGGGAACATGATGCAGACAGGGACCGAGATAGACAGAGAGATAGAGGGGGTTATGATTTTGATAATGATAGAGGTAGGGATCGAGAGAAAAGTGGAAGCAGGGAGAGGGATGATCATGAAAGGGAGAGAGGCAGAGACAGGGACCGGAGGAGACGGGTGAAATAA 2928 0.4515 MSSFSITRKKTPFQKHREEEEAKKKRAEDETARLYAEFVESFQGDSTPGSKAFVRGGTINPNEKIKADSEGEKSKDGVSAKKGSRYVPSFIPPPLATKGKEAEKKKEEEKPKEKEKGKSRNIDNFMEELKHEQEMRERRNQEREHWRDGRSTEHSSISRFDELPDDFDPSGKLPGSFDDGDPQTTNLYVGNLSPKVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIGWGKSVALPSQALPAPPPGHMAIRSKEGATVILSGPSGPSGPPVTSVSNQNSELVLTPNVPDIMVTPPEDEHLRHVIDTMALYVLDGGCAFEQAIMERGRGNPLFNFLFELGSKEHTYYVWRLYSFAQGDTLQRWRTEPFIMITGSGRWIPPSLPSTKSPEHEKESGSTHAAGRSRRVEPERTLTDAQRDEFEDMLRALTLERSQIKEAMGFALDNADAAGEIVEVLTESLTLKETPIPTKVARLMLVSDVLHNSSAPVRNASAYRTKFEATLPDIMESFNDLYRSITGRITAEALKERVLKVLQVWADWFLFSDAYVNGLRATFIRSSNSGVTLFHSICGDAPEIEKNMHSEDTVDGSKSNQDSALAMGRGAATKELMSLPLAELERRCRHNGLSLVGGREMMVARLLSLEEAEKQRGYELDDELKYAQNQTSSGRYSSSRRETSTEPEPVGFSGWDHYGEDDLHSQGKGSVPLAQTFPIPHPELKAFTKKEKNDPVLPASKWAREDDDSDDEQKGRGKGLGLSYSSSGSENAGDGTTKTDELESAADTSISAPADSGMNEEQRQKLRRLEVALIEYRESLEERGIKNLEEIERKVTLHRKRLQAEFGLSDSGEDGQGSRRTSSERRDRRDDSHDVSRKRHRSRSRSHSPQRRSGRDREREHDADRDRDRQRDRGGYDFDNDRGRDREKSGSRERDDHERERGRDRDRRRRVK 975
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1995g00021 975 MobiDBLite consensus disorder prediction 783 798 - -
Pral1995g00021 975 MobiDBLite consensus disorder prediction 1 182 - -
Pral1995g00021 975 SMART rrm1_1 186 262 IPR000504 GO:0003723
Pral1995g00021 975 Coils Coil 450 470 - -
Pral1995g00021 975 Gene3D - 821 872 - -
Pral1995g00021 975 MobiDBLite consensus disorder prediction 11 35 - -
Pral1995g00021 975 SMART surpneu2 335 389 IPR000061 GO:0003723|GO:0006396
Pral1995g00021 975 ProSiteProfiles SURP motif repeat profile. 337 380 IPR000061 GO:0003723|GO:0006396
Pral1995g00021 975 MobiDBLite consensus disorder prediction 98 168 - -
Pral1995g00021 975 MobiDBLite consensus disorder prediction 412 445 - -
Pral1995g00021 975 Coils Coil 822 842 - -
Pral1995g00021 975 MobiDBLite consensus disorder prediction 684 826 - -
Pral1995g00021 975 Coils Coil 122 142 - -
Pral1995g00021 975 MobiDBLite consensus disorder prediction 912 968 - -
Pral1995g00021 975 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 185 266 IPR000504 GO:0003723
Pral1995g00021 975 MobiDBLite consensus disorder prediction 688 709 - -
Pral1995g00021 975 SMART 558neu5 452 587 IPR006569 -
Pral1995g00021 975 MobiDBLite consensus disorder prediction 419 445 - -
Pral1995g00021 975 MobiDBLite consensus disorder prediction 805 821 - -
Pral1995g00021 975 Pfam CID domain 452 580 IPR006569 -
Pral1995g00021 975 MobiDBLite consensus disorder prediction 880 900 - -
Pral1995g00021 975 SUPERFAMILY ENTH/VHS domain 449 589 IPR008942 -
Pral1995g00021 975 Coils Coil 17 37 - -
Pral1995g00021 975 Gene3D Surp module 323 392 IPR035967 GO:0003723|GO:0006396
Pral1995g00021 975 SMART cwf21_2 821 870 IPR013170 -
Pral1995g00021 975 CDD cwf21_RRC1-like 821 870 IPR047491 -
Pral1995g00021 975 Coils Coil 848 868 - -
Pral1995g00021 975 SUPERFAMILY Surp module (SWAP domain) 311 392 IPR035967 GO:0003723|GO:0006396
Pral1995g00021 975 Pfam Surp module 335 387 IPR000061 GO:0003723|GO:0006396
Pral1995g00021 975 Gene3D - 445 593 IPR008942 -
Pral1995g00021 975 MobiDBLite consensus disorder prediction 65 80 - -
Pral1995g00021 975 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 187 259 IPR000504 GO:0003723
Pral1995g00021 975 Gene3D - 95 268 IPR012677 -
Pral1995g00021 975 ProSiteProfiles CID domain profile. 445 590 IPR006569 -
Pral1995g00021 975 PANTHER RNA PROCESSING PROTEIN LD23810P 1 909 - -
Pral1995g00021 975 CDD RRM_SR140 184 267 IPR035009 -
Pral1995g00021 975 ProSiteProfiles SAP motif profile. 639 673 IPR003034 -
Pral1995g00021 975 MobiDBLite consensus disorder prediction 747 780 - -
Pral1995g00021 975 SUPERFAMILY RNA-binding domain, RBD 178 265 IPR035979 GO:0003676
Pral1995g00021 975 MobiDBLite consensus disorder prediction 866 975 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1995g00021 Pral-Chr1995 254185 269327 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1995g00021 182 262 Eukaryotic Initiation Factors Gene Family AT1G71770 32.099 3.68e-06 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1995g00021 K12842 - gmx:100776093 1520.37