Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1995g00020 ATGAGTTCCTTCTCCATTACACGGAAAAAAACACCCTTTCAAAAGCACAGAGAAGAAGAAGAGGCAAAGAAGAAGAGAGCAGAAGATGAAACTGCACGCTTGTATGCTGAGTTTGTTGAGTCATTTCAAGGTGATAGCACTCCTGGATCAAAGGCTTTTGTTCGAGGAGGAACTATCAATCCCAATGAAAAAATAAAAGCAGATTCTGAAGGTGAAAAGTCCAAAGATGGGGTTTCTGCAAAGAAGGGAAGTAGGTATGTTCCATCTTTTATACCTCCTCCTTTGGCAACCAAGGGAAAAGAAGCTGAGAAGAAAAAAGAGGAGGAGAAGCCTAAGGAGAAGGAGAAAGGCAAGTCGCGGAATATAGATAACTTTATGGAGGAGCTAAAACATGAGCAAGAAATGAGGGAGAGGCGAAACCAAGAACGTGAACATTGGCGTGATGGGCGCAGCACTGAACATTCTAGTATTAGTCGCTTTGATGAATTGCCTGATGATTTTGATCCAAGTGGAAAACTGCCAGGATCATTTGATGATGGTGATCCACAAACTACAAATCTATATGTTGGAAATCTCTCTCCAAAGGTTGATGAAAATTTTCTTCTCCGAACTTTTGGAAGATTTGGACCCATTGCTAGCGTAAAGATAATGTGGCCTAGGACAGAGGAGGAACGACGGCGGCAAAGAAACTGTGGCTTTGTTGCTTTCATGAACAGAGCTGATGGACAGGCTGCTAAAGATGAAATGCAAGGGGTCGTGGTTTATGAGTATGAATTGAAAATTGGCTGGGGTAAGTCTGTTGCTCTCCCATCGCAAGCACTCCCTGCACCTCCACCAGGGCATATGGCCATCAGGAGTAAGGAGGGTGCCACTGTGATCTTGTCTGGTCCATCTGGCCCATCAGGTCCACCGGTTCTCACTCCTAATGTTCCCGATATAATGGTTACACCTCCTGAAGATGAGCATCTAAGGCATGTGATTGATACCATGGCTTTGTATGTTTTGGATGGAGGATGTGCTTTTGAGCAAGCCATTATGGAGAGGGGCCGTGGCAATCCTCTTTTCAATTTCTTGTTTGAGCTTGGTTCCAAGGAACATACTTACTATGTTTGGAGACTGTACTCATTTGCTCAGGGTGACACTCTTCAGAGATGGCGGACAGAACCCTTCATTATGATAACTGGCAGTGGAAGATGGATTCCTCCATCATTGCCCTCTACAAAAAGTCCAGAACATGAAAAGGAGTCTGGGTCCACGCATGCTGCAGGGAGAAGCAGGCGTGTGGAACCCGAAAGAACACTGACTGATGCACAAAGGGATGAATTTGAGGATATGCTGCGTGCTTTAACATTAGAGAGGAGTCAAATAAAAGAAGCTATGGGGTTTGCTTTGGACAACGCTGATGCAGCTGGAGAGATAGTTGAAGTTTTAACAGAATCCCTGACACTGAAAGAGACCCCTATTCCAACTAAAGTTGCAAGGCTTATGCTCGTCTCTGATGTGCTTCACAATAGTAGTGCTCCAGTAAGAAATGCTTCTGCATATCGCACCAAGTTTGAAGCAACATTGCCTGACATAATGGAGAGTTTTAATGACTTGTATCGTAGCATAACAGGACGCATTACTGCTGAGGCCCTAAAGGAACGAGTGCTAAAAGTTCTGCAAGTGTGGGCAGATTGGTTTCTCTTTTCTGATGCTTATGTGAATGGCTTACGAGCCACGTTTATTCGTTCTAGCAACTCTGGTGTTACACTATTTCATTCCATATGTGGTGATGCACCTGAAATTGAGAAAAATATGCATTCGGAAGATACAGTTGATGGCAGCAAGAGCAACCAAGACTCTGCATTGGCAATGGGCAGAGGAGCTGCAACGAAGGAGCTAATGTCTCTTCCTCTTGCTGAGCTGGAAAGACGATGTCGACACAATGGATTGTCACTTGTGGGTGGTAGGGAAATGATGGTTGCACGGTTGCTTAGCCTGGAGGAGGCAGAAAAGCAAAGGGGTTATGAGCTAGATGATGAATTGAAATATGCTCAGAACCAAACAAGTTCTGGGAGATATTCAAGTAGCCGGAGAGAAACAAGCACTGAGCCCGAACCAGTTGGTTTCTCTGGATGGGACCACTATGGGGAGGATGATTTACACTCACAAGGCAAAGGCTCAGTGCCACTTGCGCAAACTTTTCCCATTCCACACCCTGAATTGAAAGCCTTCACAAAGAAAGAAAAGAATGATCCAGTGTTACCAGCTTCTAAGTGGGCTCGAGAGGATGATGATAGTGATGATGAACAGAAGGGTCGTGGAAAGGGTTTGGGATTAAGCTACTCATCTTCAGGTAGCGAGAATGCTGGTGATGGTACTACTAAGACAGATGAGCTGGAGTCTGCTGCTGATACGAGCATTTCCGCACCAGCTGATAGTGGAATGAATGAAGAGCAGAGGCAGAAGTTGAGACGCCTAGAAGTTGCTTTAATTGAATACCGGGAGTCTCTTGAAGAGAGGGGAATAAAAAATTTGGAGGAAATTGAGAGAAAAGTCACACTGCACAGGAAACGGTTGCAAGCAGAGTTTGGATTATCAGATTCTGGAGAAGATGGTCAAGGAAGTAGAAGAACATCTTCAGAGAGGAGGGACAGGAGAGATGATTCACATGATGTTTCAAGAAAACGCCACCGTAGTCGTAGCCGAAGTCATAGTCCACAACGAAGATCAGGCAGAGACAGGGAGAGGGAACATGATGCAGACAGGGACCGAGATAGACAGAGAGATAGAGGGGGTTATGATTTTGATAATGATAGAGGTAGGGATCGAGAGAAAAGTGGAAGCAGGGAGAGGGATGATCATGAAAGGGAGAGAGGCAGAGACAGGGACCGGAGGAGACGGGTGAAATAA 2895 0.4522 MSSFSITRKKTPFQKHREEEEAKKKRAEDETARLYAEFVESFQGDSTPGSKAFVRGGTINPNEKIKADSEGEKSKDGVSAKKGSRYVPSFIPPPLATKGKEAEKKKEEEKPKEKEKGKSRNIDNFMEELKHEQEMRERRNQEREHWRDGRSTEHSSISRFDELPDDFDPSGKLPGSFDDGDPQTTNLYVGNLSPKVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIGWGKSVALPSQALPAPPPGHMAIRSKEGATVILSGPSGPSGPPVLTPNVPDIMVTPPEDEHLRHVIDTMALYVLDGGCAFEQAIMERGRGNPLFNFLFELGSKEHTYYVWRLYSFAQGDTLQRWRTEPFIMITGSGRWIPPSLPSTKSPEHEKESGSTHAAGRSRRVEPERTLTDAQRDEFEDMLRALTLERSQIKEAMGFALDNADAAGEIVEVLTESLTLKETPIPTKVARLMLVSDVLHNSSAPVRNASAYRTKFEATLPDIMESFNDLYRSITGRITAEALKERVLKVLQVWADWFLFSDAYVNGLRATFIRSSNSGVTLFHSICGDAPEIEKNMHSEDTVDGSKSNQDSALAMGRGAATKELMSLPLAELERRCRHNGLSLVGGREMMVARLLSLEEAEKQRGYELDDELKYAQNQTSSGRYSSSRRETSTEPEPVGFSGWDHYGEDDLHSQGKGSVPLAQTFPIPHPELKAFTKKEKNDPVLPASKWAREDDDSDDEQKGRGKGLGLSYSSSGSENAGDGTTKTDELESAADTSISAPADSGMNEEQRQKLRRLEVALIEYRESLEERGIKNLEEIERKVTLHRKRLQAEFGLSDSGEDGQGSRRTSSERRDRRDDSHDVSRKRHRSRSRSHSPQRRSGRDREREHDADRDRDRQRDRGGYDFDNDRGRDREKSGSRERDDHERERGRDRDRRRRVK 964
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1995g00020 964 Coils Coil 439 459 - -
Pral1995g00020 964 MobiDBLite consensus disorder prediction 736 769 - -
Pral1995g00020 964 SMART surpneu2 324 378 IPR000061 GO:0003723|GO:0006396
Pral1995g00020 964 Gene3D - 434 582 IPR008942 -
Pral1995g00020 964 MobiDBLite consensus disorder prediction 401 433 - -
Pral1995g00020 964 MobiDBLite consensus disorder prediction 1 182 - -
Pral1995g00020 964 SMART rrm1_1 186 262 IPR000504 GO:0003723
Pral1995g00020 964 MobiDBLite consensus disorder prediction 772 787 - -
Pral1995g00020 964 MobiDBLite consensus disorder prediction 11 35 - -
Pral1995g00020 964 PANTHER RNA PROCESSING PROTEIN LD23810P 1 898 - -
Pral1995g00020 964 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 187 259 IPR000504 GO:0003723
Pral1995g00020 964 Coils Coil 811 831 - -
Pral1995g00020 964 CDD cwf21_RRC1-like 810 859 IPR047491 -
Pral1995g00020 964 SUPERFAMILY Surp module (SWAP domain) 298 381 IPR035967 GO:0003723|GO:0006396
Pral1995g00020 964 MobiDBLite consensus disorder prediction 901 957 - -
Pral1995g00020 964 MobiDBLite consensus disorder prediction 98 168 - -
Pral1995g00020 964 Coils Coil 122 142 - -
Pral1995g00020 964 MobiDBLite consensus disorder prediction 408 433 - -
Pral1995g00020 964 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 185 266 IPR000504 GO:0003723
Pral1995g00020 964 Coils Coil 837 857 - -
Pral1995g00020 964 MobiDBLite consensus disorder prediction 673 815 - -
Pral1995g00020 964 Gene3D - 810 861 - -
Pral1995g00020 964 ProSiteProfiles SURP motif repeat profile. 326 369 IPR000061 GO:0003723|GO:0006396
Pral1995g00020 964 Coils Coil 17 37 - -
Pral1995g00020 964 Gene3D - 95 268 IPR012677 -
Pral1995g00020 964 ProSiteProfiles CID domain profile. 434 579 IPR006569 -
Pral1995g00020 964 MobiDBLite consensus disorder prediction 677 698 - -
Pral1995g00020 964 Pfam CID domain 441 569 IPR006569 -
Pral1995g00020 964 MobiDBLite consensus disorder prediction 794 810 - -
Pral1995g00020 964 SMART cwf21_2 810 859 IPR013170 -
Pral1995g00020 964 MobiDBLite consensus disorder prediction 65 80 - -
Pral1995g00020 964 MobiDBLite consensus disorder prediction 855 964 - -
Pral1995g00020 964 SUPERFAMILY ENTH/VHS domain 438 578 IPR008942 -
Pral1995g00020 964 Gene3D Surp module 312 381 IPR035967 GO:0003723|GO:0006396
Pral1995g00020 964 ProSiteProfiles SAP motif profile. 628 662 IPR003034 -
Pral1995g00020 964 CDD RRM_SR140 184 267 IPR035009 -
Pral1995g00020 964 Pfam Surp module 324 376 IPR000061 GO:0003723|GO:0006396
Pral1995g00020 964 MobiDBLite consensus disorder prediction 869 889 - -
Pral1995g00020 964 SMART 558neu5 441 576 IPR006569 -
Pral1995g00020 964 SUPERFAMILY RNA-binding domain, RBD 178 265 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1995g00020 Pral-Chr1995 253768 270465 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1995g00020 182 262 Eukaryotic Initiation Factors Gene Family AT1G71770 32.099 3.31e-06 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1995g00020 K12842 - gmx:100776093 1493.79