Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1994g00001 ATGGCCGTGGCGAGTCCTGTGCCTGCAATTACACGAGGTTTCAGGTCTGTGGGGTTTTCTCAGGACTCTGGGGTCACCGGCAACATGGCTGGGGTGGAAGAAATTGTAGAGGAGCCTAACAAAAGTGTGGTTAATGACACTATTTATGTTGCTGTGGCAAAAGATTTGAAAGAGAGCAAGTCAAATCTGACATGGGCTATACAAAACTCTGGAGGAAACAAGATTTGCATCCTCCATGTTCATGTGCCTGCAACTATGATCCCCTTGATGGGCACTAAGTTTCCAGCAAGTTCATTGAAAGAAGAGGAAGTTGAAGCATACAGGGAGCTTGAAAGGCAAAACATGCATAAGAATCTAGATGAACATCTTCTCTTCTGTTCGCGAATGGGGGTCCGAGCAGAGAAGTTGCATATGGAAATGGAATGCATCGAGAAAGGTATTGTACAGCTTGTCTCTGAGCATGGTATCTGTGAGCTTGTGATGGGGGCAGCATCTGATAATCGTCATTCTAGGAAAAGGACAGACCTCAAATCCAAGAAAGCCATTTATGTGAGTGAACATGCTGCAGCTTATTGTCGGATACGGTTTGTCTGCAAAGGGCGCCTTATACACACTAGAAATCGCTGCTTGGATGATGGTAATGAAGAGGTTGCATCACCTTTGCCGCCACAGAGGCCAAACCCTGAAGCTGTGCGTGCACCTCAGTTGAGGTCTCAATCTGTTACGGTGGGGCAGAATGATCGGATAAGGCTGGAGTTACTTCCCAGAGCAAGGTCTGCCATTTCTGGGCATGAAGGGAGAATAGAGACCTTTTCTTCCCCTGACACAGAACGGTTTTCCAGTCCAAGTAACATATTGGGTATAGAAGCAGACGGGCTGTCAAGAAAGAGTCCTTCAGTTTTATCAACATGTTCTGAAAGTGGTGCTGTTGAAGCAGCATTGACTCCTAAATTGATTTATGAGGGGAGTGAAAATGTTATAGAATCAAGTGAATTTTCTCCAGTTAAAGCAAGTCTCCATCGTCCATCTCCTCTTAGCGATGGAGGAATGGATGACTCTCTCTACTATCAACTTGAACAAGCCATGTATGAAGCTGAGACTGCTAGGCGGAATGCCTTTCAAGAAACACTTAGGCGTGGGAGAGCTGAAAAAGATGCACTTGATGCTATGCGGAGGGCCAAAGCATCTGAAAGCTTGTATAAAGAAGGACTCAAACAAAGGAAACGAGTCGAGGAAGCACTAGAAAAAGAAAGAGAAGAACTTGAAGGGGTGAAGGGCAAGAGAGACAAAGTTAAGGAAGAACTAAGACTTGCCCTTGATCAAAAGCTGTCTTTGGAGAGTCAAATTGAATCATCTGTATTCATGGTAAGGGAGTTACAGCAGAAGATTATATCTACGGTGGATCTGTTGACAACATACAAGAAAGAAAGAGATGAGTTACAGATGCAGCGCAATGATGCATTGAAAGAGGCCGAGGAGTTGAGGAAAAAACAAGGAGAGGTTTCAAGCGTCAATGGGCCTGAGTCGTTTTCAGAGTTCTCTTTTCAAGAGATTGAACAAGCAACAAGAAACTTCCATTCATCCCTAAAGATTGGAGAAGGGGGATATGGAAATATCTATAAAGGTACCTTGCGTCAAACCGAAGTGGCCATAAAGATGTTGCACGCAGACAACAACTCGCAAGGACCTGCAGAGTTTCAACAGGAGGTTGATGTATTGAGTAAGCTAAGACATCCCAACCTTATCACACTCGTAGGAGCCTGCCCAGAATCCTGGACTCTTGTCTACGAGTATCTACCAAATGGAAGCCTTGAAGACCGGCTCAATTGCAAGGATAACACAGCTCCATTATTATGGCAGACTCGAATTCGCATTGCTGCTGAGCTCTGTTCTGCTCTCATCTTCCTTCATTGCCATAGACCTCACTCCATAGTGCATGGAGATTTGAAACCCTCTAATGTTCTACTTGATGCTAACTTTTTTAGCAAGCTTAGTGACTTTGGAATTTGCCGCATATTATCCAATATTGAGACTTCAGGTGATGATACTACAGATTGTTGTCGAACTGTTCCAAAGGGTACTCTAGTCTACATGGACCCCGAATTTCTCACCTCTGGGTATCTTACGCTAAAATCAGATGTTTATTCATTTGGCATCATATTATTAAGATTGCTGACTGGGAGACCAGCCATGGGGATAGCAAAGGAAGTGCAATACGCACTAGACACTAGAAAGTTTAAATCCCTCTTGGATCCTTTGGCTGGAGACTGGCCATATGTGCAAGCTGAACAGTTGGCTCGTGTGGCTCTAAGGTGTTGTGAGTGGAATCGAAAGAACCGACCAGATCTTCGTTCAGATGTCTGGACGATACTGGAAGCAATGACTGCTTTTTGTGGAGGCACGGATTCCTTTTCCTTTAAACTGGGTTATAAAGGTTCTGACCAGCCTCCTTCATGTTTTATCTGTCCAATCCTTCAGGAACTGATGCTGGATCCGCATATTGCAGCGGATGGTTTTTCATATGAAGGTGAGGCGGTACGAAGATGGCTCGACAGTGGTCAGGACACGTCACCCATGACAAACGCAAAGCTTAAACATCGTGAAATTGTGCCAAACCACGCTCTTCGCAGTGCAATTCAGGACTGGCTACAAAATCACTGA 2661 0.4472 MAVASPVPAITRGFRSVGFSQDSGVTGNMAGVEEIVEEPNKSVVNDTIYVAVAKDLKESKSNLTWAIQNSGGNKICILHVHVPATMIPLMGTKFPASSLKEEEVEAYRELERQNMHKNLDEHLLFCSRMGVRAEKLHMEMECIEKGIVQLVSEHGICELVMGAASDNRHSRKRTDLKSKKAIYVSEHAAAYCRIRFVCKGRLIHTRNRCLDDGNEEVASPLPPQRPNPEAVRAPQLRSQSVTVGQNDRIRLELLPRARSAISGHEGRIETFSSPDTERFSSPSNILGIEADGLSRKSPSVLSTCSESGAVEAALTPKLIYEGSENVIESSEFSPVKASLHRPSPLSDGGMDDSLYYQLEQAMYEAETARRNAFQETLRRGRAEKDALDAMRRAKASESLYKEGLKQRKRVEEALEKEREELEGVKGKRDKVKEELRLALDQKLSLESQIESSVFMVRELQQKIISTVDLLTTYKKERDELQMQRNDALKEAEELRKKQGEVSSVNGPESFSEFSFQEIEQATRNFHSSLKIGEGGYGNIYKGTLRQTEVAIKMLHADNNSQGPAEFQQEVDVLSKLRHPNLITLVGACPESWTLVYEYLPNGSLEDRLNCKDNTAPLLWQTRIRIAAELCSALIFLHCHRPHSIVHGDLKPSNVLLDANFFSKLSDFGICRILSNIETSGDDTTDCCRTVPKGTLVYMDPEFLTSGYLTLKSDVYSFGIILLRLLTGRPAMGIAKEVQYALDTRKFKSLLDPLAGDWPYVQAEQLARVALRCCEWNRKNRPDLRSDVWTILEAMTAFCGGTDSFSFKLGYKGSDQPPSCFICPILQELMLDPHIAADGFSYEGEAVRRWLDSGQDTSPMTNAKLKHREIVPNHALRSAIQDWLQNH 886
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1994g00001 886 Coils Coil 400 448 - -
Pral1994g00001 886 ProSiteProfiles U-box domain profile. 815 886 IPR003613 GO:0004842|GO:0016567
Pral1994g00001 886 SMART serkin_6 525 791 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral1994g00001 886 MobiDBLite consensus disorder prediction 213 237 - -
Pral1994g00001 886 ProSiteProfiles Protein kinase domain profile. 525 797 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral1994g00001 886 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 814 886 IPR013083 -
Pral1994g00001 886 FunFam receptor-like protein kinase FERONIA 488 598 - -
Pral1994g00001 886 ProSitePatterns Protein kinases ATP-binding region signature. 531 552 IPR017441 GO:0005524
Pral1994g00001 886 Pfam U-box domain 817 886 IPR003613 GO:0004842|GO:0016567
Pral1994g00001 886 Pfam Protein kinase domain 526 783 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral1994g00001 886 ProSitePatterns Serine/Threonine protein kinases active-site signature. 644 656 IPR008271 GO:0004672|GO:0006468
Pral1994g00001 886 Gene3D HUPs 46 190 IPR014729 -
Pral1994g00001 886 SUPERFAMILY Protein kinase-like (PK-like) 501 784 IPR011009 -
Pral1994g00001 886 Coils Coil 470 497 - -
Pral1994g00001 886 Gene3D Transferase(Phosphotransferase) domain 1 599 798 - -
Pral1994g00001 886 Gene3D Phosphorylase Kinase; domain 1 494 598 - -
Pral1994g00001 886 CDD RING-Ubox_WDSUB1-like 817 872 - -
Pral1994g00001 886 CDD STK_N 47 200 - -
Pral1994g00001 886 SUPERFAMILY RING/U-box 814 885 - -
Pral1994g00001 886 PANTHER OS02G0152300 PROTEIN 48 881 - -
Pral1994g00001 886 SMART Ubox_2 819 882 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1994g00001 Pral-Chr1994 15764 20905 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1994g00001 1 886 U-box Gene Family AT2G45910 51.066 0.0 861
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Pral1994g00001 Pkinase 6.3e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1994g00001 - - qsa:O6P43_027236 1110.9