Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1993g00010 ATGGACTATGGCAGGCTCCAACCCTCCCAACCCGGTGGCTCCTCCCGCCGCTCCGATTTTTCCATTCCTCCCCCTGCCTCCCCCCGCAGAAACAAGAAACTCATCTTCCTCTCCCTCCTCGCTCTTGTCTTGATTGTGGCTTCAGCCATTTCCGCCGTGCTCCTTGTCGGCAACAGACATCGGTCTTCGGGTCCGGACCAGTCGGGCATCGGCGGGAAGCCCACTCAGGCTATTTCACGCACCTGCGGCAAAACTCAGTTCCCTTCCCTCTGCGTTAAGTCCCTCCTCGATTTTCCCGGTTCCACCGCCGCGTCGGAGCAGGACCTCGTCCACATTTCCCTCAACATGACATTGCAGCACCTGAGCAAAGCCTTCGATTCCTCCACCGCCATCTCCAACGTCCAGATGGGTCCGCGTGAACGGTCGGCATATGAGGACTGCCTCGAGCTCCTCGAGGATTCCGTCGACGCGCTCCTGCGCTCCCTTACCTCTGTCGTTCCCTCCCCCTCTGGCGGCGGCGGCGGCGGCTCGACCGACGATGTGCTGACCTGGCTCAGCGCCGCACTCACGAATCAAGACACGTGCAGTGAGGGGTTCGCTGACACGAGCGGCGCAGTGAAAAATCAGATGGCCAGTAACTTGAAGAACTTATCGGAGCTCATTAGCAATTGTCTGGCGATATACGCCGGGAGCGATGCCGGCAACGATTTCTCAGGGGTTCCGATACAGAACAGAAGAAGATTAATGGGAGACATTGACAATGGCGATATCTCGGGCGAATTCCCAACCTGGTTAGGCAAAAGAGACAGACGATTGTTGAGCACGCCGGCACCGGCGATACAAGCTGATATCGTCGTGTCGAAGGACGGGAGCGGAACCGTTAAAACCATCGCGGAGGCGATAAAGAAAGTGCCTGAGCACAGTAGTCGCCGGATTATCGTGTACGTGAAGGCAGGAAGGTACGAAGAGGAGAATTTGAAGGTTGGGAAGAAGAAGACCAATGTGATGTTCGTAGGTGATGGGAAGGGCAAGACAATTATCACAGGAGGCAGAAATTTTGCGCAAGGCACCACTACCTTCCACACTGCCTCCTTCGCTGCTTCTGGGGCTGGTTTTATTGCCAAGGATATGACGTTCGAGAACTACGCGGGGCCCGGAAAGCACCAAGCGGTGGCCCTTCGTGTCGGAGCCGACCATGCGGTGGTGTACCGATGCAGCATCATCGGGTACCAAGACACATGTTATGTCCATTCCAACCGTCAGTTCTTCCGGGAATGTGACATTTATGGCACTATTGACTTCATCTTCGGCAACGCCGCTGTGGTTTTCCAAAGCTGTAACCTCGTATCTCGAAAGCCCATGGCCCAACAGACGAACACCATCACGGCCCAAAATAGAAAAGACCCGAATCAGAACACGGGTATTTCCATCCACAATTGTCGGATCCAAGCCGCTTCAGATCTGGAGGCGGCCAAGGGAAGCATCCCAACCTATCTGGGCCGTCCGTGGAAGATATACTCTAGAACCGTTTACATGCTATCCTACATGGGGGATCACATAAATCCGCGCGGATGGTTGGAGTGGAATGCCACATCTCCGGTAGACAAATTGTATTATGGAGAGTATATGAATAGTGGGCCGGGTGCAGCTGTTGGGGGCCGGGTCAACTGGCCAGGGTATCGGGTTATAACGTCCAAGGAGGAGGCAAGTAGGTTCACGGTGGCGCAATTCATAGCGGGGTCGTCATGGTTGCCGTCGACGGGGGTGGCATTTGTCGGAGGACTATCTAACTGA 1794 0.5535 MDYGRLQPSQPGGSSRRSDFSIPPPASPRRNKKLIFLSLLALVLIVASAISAVLLVGNRHRSSGPDQSGIGGKPTQAISRTCGKTQFPSLCVKSLLDFPGSTAASEQDLVHISLNMTLQHLSKAFDSSTAISNVQMGPRERSAYEDCLELLEDSVDALLRSLTSVVPSPSGGGGGGSTDDVLTWLSAALTNQDTCSEGFADTSGAVKNQMASNLKNLSELISNCLAIYAGSDAGNDFSGVPIQNRRRLMGDIDNGDISGEFPTWLGKRDRRLLSTPAPAIQADIVVSKDGSGTVKTIAEAIKKVPEHSSRRIIVYVKAGRYEEENLKVGKKKTNVMFVGDGKGKTIITGGRNFAQGTTTFHTASFAASGAGFIAKDMTFENYAGPGKHQAVALRVGADHAVVYRCSIIGYQDTCYVHSNRQFFRECDIYGTIDFIFGNAAVVFQSCNLVSRKPMAQQTNTITAQNRKDPNQNTGISIHNCRIQAASDLEAAKGSIPTYLGRPWKIYSRTVYMLSYMGDHINPRGWLEWNATSPVDKLYYGEYMNSGPGAAVGGRVNWPGYRVITSKEEASRFTVAQFIAGSSWLPSTGVAFVGGLSN 597
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1993g00010 597 FunFam Pectinesterase 277 595 - -
Pral1993g00010 597 Gene3D - 277 595 IPR012334 -
Pral1993g00010 597 SUPERFAMILY Pectin lyase-like 278 594 IPR011050 -
Pral1993g00010 597 NCBIfam pectinesterase inhibitor domain 65 228 IPR006501 GO:0004857
Pral1993g00010 597 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 76 228 IPR035513 -
Pral1993g00010 597 CDD PMEI-like_3 82 227 - -
Pral1993g00010 597 Pfam Pectinesterase 283 580 IPR000070 GO:0030599|GO:0042545
Pral1993g00010 597 Gene3D Invertase/pectin methylesterase inhibitor family protein 75 230 IPR035513 -
Pral1993g00010 597 Pfam Plant invertase/pectin methylesterase inhibitor 77 227 IPR006501 GO:0004857
Pral1993g00010 597 SMART PMEI_2 73 227 IPR006501 GO:0004857
Pral1993g00010 597 PANTHER PECTINESTERASE 45 585 - -
Pral1993g00010 597 MobiDBLite consensus disorder prediction 1 25 - -
Pral1993g00010 597 ProSitePatterns Pectinesterase signature 2. 428 437 IPR033131 -
Pral1993g00010 597 FunFam Pectinesterase 74 231 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1993g00010 Pral-Chr1993 55884 59683 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1993g00010 1 597 Carbohydrate Esterase AT5G53370 63.167 0.0 786
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1993g00010 - - qsa:O6P43_015006 839.336