Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1992g00010 ATGGATATTCGTAAGAGGGGGAGGCCGGAGGCTGGCATCAACGTTAACGGTGGCCTCAAGAAGACCAAGCAAGAATTGGAGTCCTTATCAACTGGTGTAGGAAGCAAATCGAAGCCTTGTACCAAGTTTTTCAGCACTGCTGGCTGCCCTTTTGGGGAGGGTTGCCACTTCTTGCACTATGTTCCTGGTGGCTATAACGCTGTTGCTCAGATGATGAATTTAGCCCCTGTTACTCCTGCTGCTTCTAGAAATGTTGCAGCCCCACCGCTGGTACATAATGGCTCCAATCCTGCTGTCAAAACTCGCATATGCAATAAATACAATTCTGCAGAAGGCTGCAAATTTGGTGATAAGTGTCATTTTGCACATGGTGAATGGGAACTTGGCAAGCCTATCGCTTCAGTAGAAGATCATCGTGCTGTGGGACCCATTGCAGGCCGTATTGCTCCCAGTCGAATGGAGCCTCCACCTGGTCCTGTGGCTAGTTTTGGTGCCAATGCCACTGCCAAGATCAGTGTAGAAGCATCCTTAGCTGGAGCAATCATTGGGAAGGGTGGTGTAAACTCCAAGCAGATCTGTCGGCAAACAGGAGCAAAACTATCAATTCGGGATCATGAGTCAGATCCGAATCTTAGAAACATTGAACTTGAGGGAACGTTTGAACAAATTAAGGAAGCTAGTAACATGGTGAAAGAGTTGCTTGCAACCATCTCAATGTCTGCGCCGCCTAAAATCCCTGGTGTTCCTGGTGCGCCACCCCCTGGAAGCAATTATAAGACCAAGTTGTGTGAGAACTTCGCCAAAGGATCTTGTACTTTCGGAGAAAGATGTCACTTTGCACATGGGGCTACTGAACTGCGTAAAACAGTAGTATGA 876 0.4772 MDIRKRGRPEAGINVNGGLKKTKQELESLSTGVGSKSKPCTKFFSTAGCPFGEGCHFLHYVPGGYNAVAQMMNLAPVTPAASRNVAAPPLVHNGSNPAVKTRICNKYNSAEGCKFGDKCHFAHGEWELGKPIASVEDHRAVGPIAGRIAPSRMEPPPGPVASFGANATAKISVEASLAGAIIGKGGVNSKQICRQTGAKLSIRDHESDPNLRNIELEGTFEQIKEASNMVKELLATISMSAPPKIPGVPGAPPPGSNYKTKLCENFAKGSCTFGERCHFAHGATELRKTVV 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1992g00010 291 ProSiteProfiles Zinc finger C3H1-type profile. 257 284 IPR000571 GO:0046872
Pral1992g00010 291 SMART kh_6 165 235 IPR004087 GO:0003676
Pral1992g00010 291 SUPERFAMILY CCCH zinc finger 256 288 IPR036855 GO:0046872
Pral1992g00010 291 ProSiteProfiles Zinc finger C3H1-type profile. 98 126 IPR000571 GO:0046872
Pral1992g00010 291 SMART c3hfinal6 98 125 IPR000571 GO:0046872
Pral1992g00010 291 SMART c3hfinal6 257 283 IPR000571 GO:0046872
Pral1992g00010 291 SMART c3hfinal6 34 61 IPR000571 GO:0046872
Pral1992g00010 291 CDD KH-I_AtC3H36_like 169 234 - -
Pral1992g00010 291 ProSiteProfiles Zinc finger C3H1-type profile. 34 62 IPR000571 GO:0046872
Pral1992g00010 291 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 258 282 IPR000571 GO:0046872
Pral1992g00010 291 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 100 125 IPR000571 GO:0046872
Pral1992g00010 291 PANTHER CCCH ZINC FINGER/TIS11-RELATED 24 135 IPR045877 GO:0003729
Pral1992g00010 291 SUPERFAMILY CCCH zinc finger 35 60 IPR036855 GO:0046872
Pral1992g00010 291 FunFam Zinc finger CCCH domain-containing protein 252 288 - -
Pral1992g00010 291 Pfam KH domain 169 232 IPR004088 GO:0003723
Pral1992g00010 291 Gene3D K Homology domain, type 1 163 257 IPR036612 GO:0003723
Pral1992g00010 291 Pfam RNA-binding, Nab2-type zinc finger 39 59 - -
Pral1992g00010 291 SUPERFAMILY CCCH zinc finger 98 129 IPR036855 GO:0046872
Pral1992g00010 291 Gene3D - 258 289 - -
Pral1992g00010 291 Gene3D - 92 130 - -
Pral1992g00010 291 FunFam Zinc finger CCCH domain-containing protein 93 130 - -
Pral1992g00010 291 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 155 236 IPR036612 GO:0003723
Pral1992g00010 291 ProSiteProfiles Type-1 KH domain profile. 166 230 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1992g00010 Pral-Chr1992 38351 43525 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1992g00010 35 134 C3H Transcription Factor Family AT1G68200 26.000 2.62e-06 46.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Pral1992g00010 KH_1 2.2e-12 CL0007