Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1991g00049 ATGGAATGGAATGGAAGCATGAGACCCTTTGTTCCTCGAGCTGAGTCTTCCTTAAGTTTCCTCTACAACTATAACTGCAGCCCATATCCAGGAATGGAAGTGAAACATGCAGCGGCGGCACCAGGGTTGGTTCCGGATATGGAGAAAATAAAATACGGGAACCAGATGGAGAAGAAGAAGCGACTGACGAGCGAGCAGCTTGAGTCGCTGGAGAGGAGCTTCCAGGAAGAGATAAAGTTGGACCCCGATAGGAAGATGAAACTCTCAAGGGAGCTAGGACTGCAACCTCGCCAAATTGCTGTATGGTTCCAAAATAGGCGTGCTAGGTGGAAGGCTAAGCAGCTGGAGAACTTGTATGATGCTCTCAAACAAGAATATGATGCTATCTCTGAGGAAAAACAGAGGCTTCAAGAAGAGGTTGTGAAGTTGAAGGCAATACTAAGAGAGCAAGCTTCAAAGACACAAGTCTCTGCAGGTTATACAGAAGTTTCTGGGGAAGAAACAGTGGAAAGCACGTCAGAGGCAGCACTGCGCGGCTCTAACAAGCAGCCACGGGGAACGACGTCGAGCCATCACCCGCAGAATATTGCAGAAGCCAATTGTTCTTTCGCTGTAGAGGATTATAGCACTGTTTCACTGCCCTACTGGCCCGCTCTTGTGCCTTATTATCCTTAA 675 0.4815 MEWNGSMRPFVPRAESSLSFLYNYNCSPYPGMEVKHAAAAPGLVPDMEKIKYGNQMEKKKRLTSEQLESLERSFQEEIKLDPDRKMKLSRELGLQPRQIAVWFQNRRARWKAKQLENLYDALKQEYDAISEEKQRLQEEVVKLKAILREQASKTQVSAGYTEVSGEETVESTSEAALRGSNKQPRGTTSSHHPQNIAEANCSFAVEDYSTVSLPYWPALVPYYP 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1991g00049 224 PRINTS Lambda-repressor HTH signature 84 93 IPR000047 GO:0003677
Pral1991g00049 224 PRINTS Lambda-repressor HTH signature 93 109 IPR000047 GO:0003677
Pral1991g00049 224 MobiDBLite consensus disorder prediction 158 194 - -
Pral1991g00049 224 Pfam Homeobox associated leucine zipper 113 147 IPR003106 GO:0006355|GO:0043565
Pral1991g00049 224 Coils Coil 53 73 - -
Pral1991g00049 224 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 52 192 IPR045224 GO:0003700
Pral1991g00049 224 SMART HOX_1 56 117 IPR001356 GO:0003677
Pral1991g00049 224 ProSiteProfiles 'Homeobox' domain profile. 53 113 IPR001356 GO:0003677
Pral1991g00049 224 Coils Coil 105 153 - -
Pral1991g00049 224 CDD homeodomain 58 114 IPR001356 GO:0003677
Pral1991g00049 224 SUPERFAMILY Homeodomain-like 46 115 IPR009057 -
Pral1991g00049 224 FunFam Putative homeobox-leucine zipper protein ATHB-51 55 118 - -
Pral1991g00049 224 ProSitePatterns 'Homeobox' domain signature. 88 111 IPR017970 GO:0000981|GO:0006355
Pral1991g00049 224 Pfam Homeodomain 58 111 IPR001356 GO:0003677
Pral1991g00049 224 Gene3D - 56 117 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1991g00049 Pral-Chr1991 308566 309871 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1991g00049 16 143 Homeobox Transcription Factor Family AT5G03790 62.319 6.80e-49 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Pral1991g00049 Homeodomain 3.2e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1991g00049 - - gmx:100778007 285.804