Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1991g00048 ATGCCATTGAAAGGAATGGAAGTGAAACATGCAGCGGCGGCACCAGGGTTGGTTCCGGATATGGAGAAAATAAAATACGGGAACCAGATGGAGAAGAAGAAGCGACTGACGAGCGAGCAGCTTGAGTCGCTGGAGAGGAGCTTCCAGGAAGAGATAAAGTTGGACCCCGATAGGAAGATGAAACTCTCAAGGGAGCTAGGACTGCAACCTCGCCAAATTGCTGTATGGTTCCAAAATAGGCGTGCTAGGTGGAAGGCTAAGCAGCTGGAGAACTTGTATGATGCTCTCAAACAAGAATATGATGCTATCTCTGAGGAAAAACAGAGGCTTCAAGAAGAGGTTGTGAAGTTGAAGGCAATACTAAGAGAGCAAGCTTCAAAGACACAAGTCTCTGCAGGTTATACAGAAGTTTCTGGGGAAGAAACAGTGGAAAGCACGTCAGAGGCAGCACTGCGCGGCTCTAACAAGCAGCCACGGGGAACGACGTCGAGCCATCACCCGCAGAATATTGCAGAAGCCAATTGTTCTTTCGCTGTAGAGGATTATAGCACTGTTTCACTGCCCTACTGGCCCGCTCTTGTGCCTTATTATCCTTAA 597 0.4841 MPLKGMEVKHAAAAPGLVPDMEKIKYGNQMEKKKRLTSEQLESLERSFQEEIKLDPDRKMKLSRELGLQPRQIAVWFQNRRARWKAKQLENLYDALKQEYDAISEEKQRLQEEVVKLKAILREQASKTQVSAGYTEVSGEETVESTSEAALRGSNKQPRGTTSSHHPQNIAEANCSFAVEDYSTVSLPYWPALVPYYP 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1991g00048 198 CDD homeodomain 32 88 IPR001356 GO:0003677
Pral1991g00048 198 ProSiteProfiles 'Homeobox' domain profile. 27 87 IPR001356 GO:0003677
Pral1991g00048 198 Pfam Homeobox associated leucine zipper 87 121 IPR003106 GO:0006355|GO:0043565
Pral1991g00048 198 PRINTS Lambda-repressor HTH signature 67 83 IPR000047 GO:0003677
Pral1991g00048 198 PRINTS Lambda-repressor HTH signature 58 67 IPR000047 GO:0003677
Pral1991g00048 198 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 27 166 IPR045224 GO:0003700
Pral1991g00048 198 Pfam Homeodomain 32 85 IPR001356 GO:0003677
Pral1991g00048 198 MobiDBLite consensus disorder prediction 132 168 - -
Pral1991g00048 198 Gene3D - 25 95 - -
Pral1991g00048 198 ProSitePatterns 'Homeobox' domain signature. 62 85 IPR017970 GO:0000981|GO:0006355
Pral1991g00048 198 Coils Coil 27 47 - -
Pral1991g00048 198 SMART HOX_1 30 91 IPR001356 GO:0003677
Pral1991g00048 198 Coils Coil 79 127 - -
Pral1991g00048 198 SUPERFAMILY Homeodomain-like 21 89 IPR009057 -
Pral1991g00048 198 FunFam Putative homeobox-leucine zipper protein ATHB-51 29 92 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1991g00048 Pral-Chr1991 308566 313410 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1991g00048 18 117 Homeobox Transcription Factor Family AT5G03790 72.897 1.43e-46 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Pral1991g00048 Homeodomain 2.6e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1991g00048 - - rcu:8274879 242.276