Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1991g00038 ATGGCGGCTACTCCAATCGTCGCATCGGCACCAGCTTCGCTTTACGTTGGCGACCTCCACCCTGACGTCAGCGATGGACAGCTGTTCGAAGTGTTCTCGGAGTTTAAGAGCCTCACTTCTGTTCGGATCTGTAGGGACTCCTCCACCGGGAAGTCGCTCTGTTATGGCTATGTCAACTTCACCTCTCCCCAAGATGCTACTCGTGCTCTTGAGGTGAAGAATCATTCTAAACTGAAAGGAAAAATGATAAGAGTCATGTGGTCACATCGTGACCCCGAAGCAAGAAAAAATGGGATAGCGAACGTATTTGTTAAGAACTTAGCTGAACCTATTGATAATGCGGGATTGCACGAGCTGTTTCAAAACTTCGGGAAAATTTTGTCCAGCAAAGTTGTTACGTTTGAAGATGGCAAAAGCAAAGGGTATGGCTTCATTCAATTTGAGTCAGAGGACTCTGCAAATGCGGCCATTGAAAAGTTAAATGGCTCCACTGTTAGAGATAAACAGATATATGTTGGCAAGTTCGTCAAAAAAAGCGAACGCTTCTTGCCTGGTCCTGATTCCAAGTTCACAAATTTGTTCATGAAGAATTTGGACCCAGAGATTACAGAAGAGCTTTTGCAGGAAACGTTCGCCCCTTTCGGCAAGATTGTTAATATGGCTATTGCTAAGGACCGCAATGGAGTATCGAAGGGTTTCGGCTTTGTGAACTATGATAATCCAGATGATGCTAAACGGGCAATGGAAACCATGCATGGATCGCGACTAGGTTCGAAGATTATATATGTAGCGAGAGCACAAAAGAAGGCTGAGCGCGAAAAAATCTTGCACCATCAGTTTCAAGAGAAACGTAAGGAACAGATCTTGAAATATAAGGGATCAAACATTTATGTGAAGAACATCGGCGACGATGTCAGTGATGAAGAACTGAGAGATCATTTTAGTTCATGCGGCACAATAACATCCGCCAAAGTTATGCGGGACGACAAAGGAATAAGCAAGGGGTTTGGTTTTGTCTGTTTCTCCACTCCCGAGGAGGCCAATAAAGCTGTGAACAATTTCCATGGATGCAAGTTTCATCGTAAACCGCTATACGTTGCTATTGCTCAAAGGAAGGAAGACAGGCTAGCACGATTAAAGGTCCAGTATGCACAGGGAATAGCAGGACTAGCTGGACCTTCAACCGCTGTTATACATGGTGGATATCCTCCTTACTACTACGCAGCTACTGGTGTTGTTTCCCAGCTGCCACCTCCAACCGGGCTATTATATCAACCGCTGGGCTTCAGGCCAGGATGGAGACCTAACGGCTTTGAACCTCCTACTAGACCAGTTCAACAGACTTTGGTTTCTGTTGTGAGTAACTCTCCTATAAGGCCGCGCAGACAAAACAGGAGCAGGATAAATGGGCAGGCAATTTCGCAGGGGATTGCTCACCTGGGTACGTTCATGCCACAAGCACAACAGCTTTCTCACTCAATGGCTTCATCGAAAGAATCAACTACTCAGCAGAGGATTGGACAGACTAGGAATATGGCCAGCGGGCGCCAACGTGACATGGAAAAAGGATCTGGAGTCCCATCCTGTTGTCCTAACTCTACTGTTGGGATTCAAGGATCGAAAATGCTCCACTGCATGCTTGCTGCTGCCACTCCTGAGCAGCAGAGGCAACTGCTTGGCGAGCATATTTACCCACTGATCCAGAAACTCAGGCCCCGCTTGGCATCGAAGATTACTGGGATGCTCTTGGAGATGGAAATTAGAGAGTTGCTGCTTCTCCTGGAATCTCCAAGGTTTCTTTTGGCCAAGGTGGAAGAAGCTGTGCAGGTGCTTGAGGACTCCAAAACTAAAGAGTCGGGCCAGGATGCACTTCATCCTGGTTACTTTTCAGCTGAGGTTGCTGTGAATTGA 1911 0.4668 MAATPIVASAPASLYVGDLHPDVSDGQLFEVFSEFKSLTSVRICRDSSTGKSLCYGYVNFTSPQDATRALEVKNHSKLKGKMIRVMWSHRDPEARKNGIANVFVKNLAEPIDNAGLHELFQNFGKILSSKVVTFEDGKSKGYGFIQFESEDSANAAIEKLNGSTVRDKQIYVGKFVKKSERFLPGPDSKFTNLFMKNLDPEITEELLQETFAPFGKIVNMAIAKDRNGVSKGFGFVNYDNPDDAKRAMETMHGSRLGSKIIYVARAQKKAEREKILHHQFQEKRKEQILKYKGSNIYVKNIGDDVSDEELRDHFSSCGTITSAKVMRDDKGISKGFGFVCFSTPEEANKAVNNFHGCKFHRKPLYVAIAQRKEDRLARLKVQYAQGIAGLAGPSTAVIHGGYPPYYYAATGVVSQLPPPTGLLYQPLGFRPGWRPNGFEPPTRPVQQTLVSVVSNSPIRPRRQNRSRINGQAISQGIAHLGTFMPQAQQLSHSMASSKESTTQQRIGQTRNMASGRQRDMEKGSGVPSCCPNSTVGIQGSKMLHCMLAAATPEQQRQLLGEHIYPLIQKLRPRLASKITGMLLEMEIRELLLLLESPRFLLAKVEEAVQVLEDSKTKESGQDALHPGYFSAEVAVN 636
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1991g00038 636 Gene3D - 7 100 IPR012677 -
Pral1991g00038 636 Gene3D - 538 627 - -
Pral1991g00038 636 PANTHER RNA BINDING PROTEIN 291 443 - -
Pral1991g00038 636 FunFam Polyadenylate-binding protein 4 99 - -
Pral1991g00038 636 CDD RRM4_I_PABPs 293 371 - -
Pral1991g00038 636 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 296 364 IPR000504 GO:0003723
Pral1991g00038 636 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 193 261 IPR000504 GO:0003723
Pral1991g00038 636 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 14 83 IPR000504 GO:0003723
Pral1991g00038 636 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 102 170 IPR000504 GO:0003723
Pral1991g00038 636 SUPERFAMILY PABC (PABP) domain 511 623 IPR036053 GO:0003723
Pral1991g00038 636 CDD RRM2_I_PABPs 98 174 IPR045305 -
Pral1991g00038 636 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 191 268 IPR000504 GO:0003723
Pral1991g00038 636 Gene3D - 181 276 IPR012677 -
Pral1991g00038 636 SMART poly_2 551 614 IPR002004 GO:0003723
Pral1991g00038 636 FunFam Polyadenylate-binding protein 101 181 - -
Pral1991g00038 636 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 539 616 IPR002004 GO:0003723
Pral1991g00038 636 Gene3D - 277 383 IPR012677 -
Pral1991g00038 636 NCBIfam polyadenylate binding protein, human types 1, 2, 3, 4 family 12 611 IPR006515 GO:0003723
Pral1991g00038 636 SUPERFAMILY RNA-binding domain, RBD 12 179 IPR035979 GO:0003676
Pral1991g00038 636 SUPERFAMILY RNA-binding domain, RBD 184 274 IPR035979 GO:0003676
Pral1991g00038 636 FunFam Polyadenylate-binding protein 182 276 - -
Pral1991g00038 636 SUPERFAMILY RNA-binding domain, RBD 290 383 IPR035979 GO:0003676
Pral1991g00038 636 FunFam Polyadenylate-binding protein 277 385 - -
Pral1991g00038 636 Gene3D - 101 180 IPR012677 -
Pral1991g00038 636 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 100 177 IPR000504 GO:0003723
Pral1991g00038 636 SMART rrm2_1 192 264 IPR003954 GO:0003676
Pral1991g00038 636 SMART rrm2_1 13 86 IPR003954 GO:0003676
Pral1991g00038 636 SMART rrm2_1 101 173 IPR003954 GO:0003676
Pral1991g00038 636 SMART rrm2_1 295 367 IPR003954 GO:0003676
Pral1991g00038 636 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 294 371 IPR000504 GO:0003723
Pral1991g00038 636 MobiDBLite consensus disorder prediction 496 528 - -
Pral1991g00038 636 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 12 90 IPR000504 GO:0003723
Pral1991g00038 636 SMART rrm1_1 101 173 IPR000504 GO:0003723
Pral1991g00038 636 SMART rrm1_1 295 367 IPR000504 GO:0003723
Pral1991g00038 636 SMART rrm1_1 192 264 IPR000504 GO:0003723
Pral1991g00038 636 SMART rrm1_1 13 86 IPR000504 GO:0003723
Pral1991g00038 636 MobiDBLite consensus disorder prediction 496 514 - -
Pral1991g00038 636 Pfam Poly-adenylate binding protein, unique domain 546 611 IPR002004 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1991g00038 Pral-Chr1991 249368 253744 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1991g00038 12 634 Eukaryotic Initiation Factors Gene Family AT2G36660 50.160 0.0 587
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1991g00038 K13126 - gmx:100779547 897.886