Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1990g00001 ATGACCTCCACATCTCGAGGTTCCAACGGTGCCTCCGATAATAATGGCTTCCTCACCATCACCGTCGCCTCGCATCCGCCGGTTGGCGGTGACTCTCCTTCTACCTCCACCTGCCACCACATTGATGTCCATGATCAGGACGACGACTCGCCGGTGGATCCGGAAGATCCTTTCGATATTGCTCAAACCAAGAATGCGCCTCGTGAGGCGCTCCAGCGATGGAGACAAGCAGCACTAGTGCTTAATGCCTCACGGCGTTTCCGCTACACTCTGGACTTGAAAAAAGAAGAAGAGAAACAAAAAAAGAAAAACTTGATTAGAGCCCACGCACAAGTCATAAGAGCGGCATTGCTTTTCAAATTGGCTGGTGAACGTGAAATAGTTATAACTACATCAGCGCTATCCCCAGCTCGAATCAGTGTCGGTGATTTTGCTGTTGAACTGGAAGAACTTGTCTCAATGTTTAAGGATCATGACCTTTCTGCTTTAGAGCAATATGGAGGGGTTAAAGGTTTATCAAATTTACTAAAATCAAGTCCCGAGAAAGGAATTAATGGTACTAATGATGATCTATTAAGAAGGAGAAGCGCATTTGGAACAAATACTTATCCTCGGAAGAAGGGGAGGAGTTTCTTTAGGTTTTTATGGGAAGCTTGGCAAGATCTGACCCTCATCATATTGATTGTTGCAGCAGCAGTGTCATTAGTACTTGGAATAAAAACAGAGGGTCTGAAAGAAGGGTGGTATGATGGGGGCAGCATTGCTTTTGCAGTTTTTCTTGTCATTGTAGTTACAG 796 0.4523 MTSTSRGSNGASDNNGFLTITVASHPPVGGDSPSTSTCHHIDVHDQDDDSPVDPEDPFDIAQTKNAPREALQRWRQAALVLNASRRFRYTLDLKKEEEKQKKKNLIRAHAQVIRAALLFKLAGEREIVITTSALSPARISVGDFAVELEELVSMFKDHDLSALEQYGGVKGLSNLLKSSPEKGINGTNDDLLRRRSAFGTNTYPRKKGRSFFRFLWEAWQDLTLIILIVAAAVSLVLGIKTEGLKEGWYDGGSIAFAVFLVIVVT 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1990g00001 265 MobiDBLite consensus disorder prediction 1 21 - -
Pral1990g00001 265 FunFam Calcium-transporting ATPase 66 122 - -
Pral1990g00001 265 Gene3D - 188 216 - -
Pral1990g00001 265 Gene3D - 68 121 - -
Pral1990g00001 265 Pfam Cation transporter/ATPase, N-terminus 166 234 IPR004014 -
Pral1990g00001 265 Pfam Ca2+-ATPase N terminal autoinhibitory domain 56 98 IPR024750 GO:0005516
Pral1990g00001 265 SUPERFAMILY Calcium ATPase, transmembrane domain M 166 265 IPR023298 -
Pral1990g00001 265 Gene3D - 217 263 - -
Pral1990g00001 265 SMART Cation_ATPase_N_a_2 165 239 IPR004014 -
Pral1990g00001 265 PANTHER CATION TRANSPORTING ATPASE 104 265 - -
Pral1990g00001 265 MobiDBLite consensus disorder prediction 1 56 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1990g00001 Pral-Chr1990 45 6205 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1990g00001 12 265 Primary Pumps ATPases AT3G21180 59.608 3.10e-94 297
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1990g00001 K01537 - gmx:100817367 339.732