Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1986g00012 ATGGAGGTTCCGGACATGGAAGACAAGAACAATGAAAGTCGTATGACGTCAGCCGCAGCCTTTGTGGAAGGGGGCGTTCAAGAAGCATGTGATGATTCTTGCAGCATATGCCTTGAGGATTTTAGTGAAAGCAATCCTTCAGCGGTTACTACTTGCAAGCATGATTTTCACCTGCAGTGCATTCTTGAATGGTGTCAGAGGAGCTCCCAGTGCCCTATGTGTTGGCAGTCTATTAGTTTCAAGGATTCTACAAGTCAAGAATTGTTTGAGGCTGTGGTTCAGGAAAGGAATTTGAGGGCTACTTCCTCAAGAAATGCAACTATTTTCCATCACCTCGCTGGTCTTGGTGATTTTGACTTGCAGCATTTATCCATGGGACTAAGTGAAGCAGATGTTGAAGAGAGGATAATTCAACATTTAGCTGCTGCTACAGTCATGGGAAGAGGCTTCAACCTTGGTTGGAGAGAAGGAAATAGGACTAGATCATTCCCTCACGGTCGTCCTCCCTTCATAGTGTTCTCAACTCCTCCACCCGGTGCTGTGTCTGCTGCTGCAGGGGGAACTGAACCAACTGCAATTCCTGTAGGAAATCCGTCTACCCCACTTACATTTGGAGTTGAACCATCACAGCAGATCCCAACCCTTCAAACACACAGTTCTTTACCTCCTGGATATACTGACATGGCGACAAATCGTCAAAGAATTCTTTTTAATGATAGAAGTTCTGCTGTCCGTTCTGTACCACCTGACCAGGGCAGAGCAGGGCCATCAGAACTTCAGTCATTTTCCGAGTCTCTGCGATCCAGACTCGGTTCAGTGTCTATGAGATACAAAGAGACTATTTCAAAGGGCGCAAGGGGATGGAAGGAAAGGCTGTTCTCTCGTAGCACTTCCATGTCTGATATTGGTGCAGAAGTCAGGAGAGAGTTGAATGCTGGAATTGCTAGTGTATCCCGCTTGATGGAGCGCCTTGAAACAAGAGAAAAGAATGATAGAGAAGGGGATAGTTCTTTGTCGAATCATGTGGCTGCAGAGACAAGCAACTCAAACAATGCCGAAGCTAGTGAGGTTAACACTCTGTGTGACAAAGCTCCAGCAGCTTGTTCTGCTGGCCCACGCTCAGACTGA 1128 0.4672 MEVPDMEDKNNESRMTSAAAFVEGGVQEACDDSCSICLEDFSESNPSAVTTCKHDFHLQCILEWCQRSSQCPMCWQSISFKDSTSQELFEAVVQERNLRATSSRNATIFHHLAGLGDFDLQHLSMGLSEADVEERIIQHLAAATVMGRGFNLGWREGNRTRSFPHGRPPFIVFSTPPPGAVSAAAGGTEPTAIPVGNPSTPLTFGVEPSQQIPTLQTHSSLPPGYTDMATNRQRILFNDRSSAVRSVPPDQGRAGPSELQSFSESLRSRLGSVSMRYKETISKGARGWKERLFSRSTSMSDIGAEVRRELNAGIASVSRLMERLETREKNDREGDSSLSNHVAAETSNSNNAEASEVNTLCDKAPAACSAGPRSD 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1986g00012 375 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 17 82 - -
Pral1986g00012 375 Pfam Ring finger domain 32 74 IPR001841 -
Pral1986g00012 375 MobiDBLite consensus disorder prediction 242 263 - -
Pral1986g00012 375 ProSiteProfiles Zinc finger RING-type profile. 34 74 IPR001841 -
Pral1986g00012 375 MobiDBLite consensus disorder prediction 327 375 - -
Pral1986g00012 375 SUPERFAMILY RING/U-box 27 82 - -
Pral1986g00012 375 Coils Coil 307 327 - -
Pral1986g00012 375 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 11 84 IPR013083 -
Pral1986g00012 375 SMART ring_2 34 74 IPR001841 -
Pral1986g00012 375 MobiDBLite consensus disorder prediction 339 357 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1986g00012 Pral-Chr1986 43994 47848 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1986g00012 31 82 C3H Transcription Factor Family AT4G00335 48.077 7.72e-14 67.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1986g00012 K19043 - qsa:O6P43_005750 459.144