LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pral1984g00002	ATGGTTAAGCCTCAACTTTTAGCAGTCATCTTCATCAGTATCCTCGGCCATATCCAAGTTGACTGCTTTTCTTTCAATTTCCCCACCTTCAAACAAGAAGATCAGAATGGATTAATACTACTGAGTGAGTTTTCGCGTATATTCCGAGATGCCATCCAAGTGACACCTGATGCTTACGGTGAAGACTTGAGGAACAGGTCCGGGAGGGCCTTCTACTATAAGGCGTACAGAGTTTGGAACAAGAAGAAGAACCAAACTGCATCATTCAATACCACCTTCGTCCTCAATATCAGCCCCGATACTCCTTCAAACCCAGGTGCCGGCGAAGGTTTGGCCTTCATACTAGCTGCTGACAAAAGTCTCCCCCCCAACAGCCATGGAAGATGGCTTGGCGTTGTGAATTCTTCCACAAATGGCACTTCTGGTGCAGCCGTATTGGCTGTGGAGTTTGATACCAGAAGCAACTCCCCTGAAGACGGCTCAGACGGTCATGTTGGCGTCAACGTGAACAGTGTTTACTCCATCAAGCACGTTCCGTTACTTCCCTTGGGGATCAATATTTCATCGGGCACCAATGTGGCCGTGAGAATTCAGTATGATAACGATGTGATTTCTGTCTTCGGTTACATGATGAATGGAACCAAAGCACAAGACATGAAGCTCTTGTTGCAATCTCCACCCCTCAATCTCACCTCATATCTCCCGGAGAAGGTATTTCTGGGGTTCTCTGCGTCGACAAGTAATTTCAATGAGCTGAACTGCATCAGAGCGTGGGAGTTCAACGGTGAAGATATTGGAGACGGAAATCAAGAACTGCTATGGGTTTGGATCACAGTTCCAGTGGTGGTGGTTATCGCCGGTGCGGTGATACTTTTCTTGATATGGCGGTGGAAACGAAATAGGGAGATAGCAGAGGATGCGTATCCGAGGATAGAAGACCAGATTAAGTATTCCTCAATGGTTCCAAAGAAGTTCCGGCTGAGGGAAATAAAAAAGGCGACGAGCAATTTCAACGACCAGAACAAGCTGGGGGAAGGTGGTTTCGGAAAAGTGTACAAGGGAATCCTGGGAAACAGGGAGATCGCCGTGAAGAGAGTCTCCAAGGATTCACGCCAAGGGAAGCAAGAATTCATAGCAGAAGTCACGACAATAGGCAGCCTTCACCACAAGAATCTGGTTAAACTCACAGGGTGGTGCTATGAGAGAAAAGAACTCCTACTCGTCTACGAGTTCATGCCCAATGGAAGCTTAGACAAATACCTATTCGGCAGCACAGACGGATCACCATATCAAAACCTTCACTGGGAAACCAGATGCAGTGCGATATACGGTGTGGCTGAAGCCCTTGACTATCTTCACAACGGCTGCGACAAGAAGGTGATTCACAGGGACATCAAGGCCAGCAATATCATGTTGGACTCAGACTTCAACGCCAAGCTGGGAGACTTTGGATTGGCTCGAACCATCCAAAAAAGAAATGAGACTCACCATTCCACGAAAGAAATAGCAGGAACACCAGGTTACATGGCCCCAGAGACGTTTCTGACAGGGAGGGCAACAGTGGAAACAGACGTGTACGCATTTGGGGTTCTGATAATGGAAGTAGTCTGTGGGAAGAGGCCAGGGAACATGTGTGTTCAGAACGACTACAAGAATAGCATAGTGTACTGGGTGTGGGAGATGTATGGGAATGGAAGAACACTAGACGGAGTGGATAGGAGAATAAAGAAGGAGATAGAGGAAGACGAGGAACGAGTGGAAAGAGTGATAGTGCTAGGCCTGGCTTGTTGCCATCCCAATCCTCACAAAAGGCCATCCATGAAGACAGTACTGCAGGTCCTGACAGGCGAGGTGGCTCCGCCGGAGGTCCCGAGGGAACGGCCGGCTTTTGTGTGGCCGGCCGCTCCCCCTTCCTTCAACGTCAATGATAACTCCATTAATTCGGCCCAACTCACTCCTCCCTTCACTCAGCTCACCGGCAGATGA	1986	0.4864	MVKPQLLAVIFISILGHIQVDCFSFNFPTFKQEDQNGLILLSEFSRIFRDAIQVTPDAYGEDLRNRSGRAFYYKAYRVWNKKKNQTASFNTTFVLNISPDTPSNPGAGEGLAFILAADKSLPPNSHGRWLGVVNSSTNGTSGAAVLAVEFDTRSNSPEDGSDGHVGVNVNSVYSIKHVPLLPLGINISSGTNVAVRIQYDNDVISVFGYMMNGTKAQDMKLLLQSPPLNLTSYLPEKVFLGFSASTSNFNELNCIRAWEFNGEDIGDGNQELLWVWITVPVVVVIAGAVILFLIWRWKRNREIAEDAYPRIEDQIKYSSMVPKKFRLREIKKATSNFNDQNKLGEGGFGKVYKGILGNREIAVKRVSKDSRQGKQEFIAEVTTIGSLHHKNLVKLTGWCYERKELLLVYEFMPNGSLDKYLFGSTDGSPYQNLHWETRCSAIYGVAEALDYLHNGCDKKVIHRDIKASNIMLDSDFNAKLGDFGLARTIQKRNETHHSTKEIAGTPGYMAPETFLTGRATVETDVYAFGVLIMEVVCGKRPGNMCVQNDYKNSIVYWVWEMYGNGRTLDGVDRRIKKEIEEDEERVERVIVLGLACCHPNPHKRPSMKTVLQVLTGEVAPPEVPRERPAFVWPAAPPSFNVNDNSINSAQLTPPFTQLTGR	661

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pral1984g00002	661	SUPERFAMILY	Protein kinase-like (PK-like)	317	614	IPR011009	-
	Pral1984g00002	661	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	460	472	IPR008271	GO:0004672\|GO:0006468
	Pral1984g00002	661	SUPERFAMILY	Concanavalin A-like lectins/glucanases	21	262	IPR013320	-
	Pral1984g00002	661	ProSiteProfiles	Protein kinase domain profile.	337	630	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pral1984g00002	661	FunFam	Probable L-type lectin-domain containing receptor kinase S.5	322	411	-	-
	Pral1984g00002	661	FunFam	Probable L-type lectin-domain containing receptor kinase S.5	22	269	-	-
	Pral1984g00002	661	SMART	serkin_6	337	614	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pral1984g00002	661	FunFam	probable L-type lectin-domain containing receptor kinase S.5	412	620	-	-
	Pral1984g00002	661	ProSitePatterns	Protein kinases ATP-binding region signature.	343	364	IPR017441	GO:0005524
	Pral1984g00002	661	Gene3D	Phosphorylase Kinase; domain 1	322	411	-	-
	Pral1984g00002	661	Gene3D	Transferase(Phosphotransferase) domain 1	412	620	-	-
	Pral1984g00002	661	ProSitePatterns	Legume lectins beta-chain signature.	146	152	IPR019825	-
	Pral1984g00002	661	Pfam	Legume lectin domain	24	264	IPR001220	GO:0030246
	Pral1984g00002	661	Pfam	Protein kinase domain	338	612	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pral1984g00002	661	PANTHER	-	56	621	-	-
	Pral1984g00002	661	CDD	STKc_IRAK	343	616	-	-
	Pral1984g00002	661	Gene3D	-	20	269	-	-
	Pral1984g00002	661	CDD	lectin_legume_LecRK_Arcelin_ConA	23	261	IPR001220	GO:0030246

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pral1984g00002	Pral-Chr1984	8551	10536	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pral1984g00002	67	630	Receptor kinase-like Gene Family	AT5G55830	36.755	2.15e-115	359

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_L-LEC	Pral1984g00002		Pkinase	6.4e-52	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pral1984g00002	-		-	pcin:129307821	1153.66