Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1982g00009 ATGTGTGCACTCTATGACAGGAAGAATGAAGGATTGACTTCTTGTAGGAAAAAGCCAAAACGGCGCTGCCTGGATACGAACAAGGGTTCTAAAAGCCCTAGAAAAGAAGACACTATCGTGGGAGACTATACTGTACTTAAAAGCCAGGTATCAGAGGAAGAGAATATGAATGAACAGCGGAATGGTTCTGGAGATTTGGGACCCTCAAGAGCATATACTGCAGCTTGCGCTCTAAAACGTGCAGCTTCTCCCAAACTTGAAAAAGAAGACTCTGAACGGACGCATGGTGAAGTTAAGAATGCTGTCCAAAAAAGCTCGTTATCACATGATGGACATCATGAAGGAATTTCATCCCCTGACCATATTCTGTCTGGAACATCCACAAAAGACAGTCATGAAAAAGAAAAAACTTATGCCTGGGTAAATCAGGTCAATTCAACAAATTTTACAGAACAATCTGAATCAAAAGGCACGTGCATGTGTGCTGAGGAGTCTCCTAATGGAATCATTCCCAACGTTGAGCATGATTGTGACAGTTCCTGTGCTGAGGGGACTAACACGGGTCGTGACTCCATGCTGCACAAGTCTTGTGAACAAGGGGCATGTTCTGAAATCAAGAATCACAAAATTGAGTCACTTAGAAATGATACGAGAACAGCAAAAGCTTTCCTTGAAAATGATGATGCGTTAGAGACCCAATACGGGAGTGCTGTATGGGACATATTTCGCAGGCAAGATGTGCCGGTGCTGATGGAGTACCTGAAAAAACACTACAGAGAATTCCGCCACATAAATAATCTTCCTGTGAATTCTATAATACATCCAATTCATGACCAGACTCTTTATCTAAACGAAAGACATAAAAAGCAGCTAAAGGAAGAATTTGGCATTGAACCATGGACATTTGAGCAACACCTTGGCGAGGCTGTTTTCATACCTGCAGGGTGCCCGCATCAAGTGAGGAATAGACAGTCTTGCATAAAAGTGGCTCTAGACTTTGTTTCACCTGAAAATGTTCAAGAGTGTGTTCGATTGACGGAGGAATTTCGGCTGCTTCCGAAGAAACATAGATCGAAGGAAGATATACTGGAGATAAAGAAGATGGCACTGTATGCTGCCAACGCTGCTATAACTGAAGCCATGAGATTAATGCGGAGGATATGA 1164 0.427 MCALYDRKNEGLTSCRKKPKRRCLDTNKGSKSPRKEDTIVGDYTVLKSQVSEEENMNEQRNGSGDLGPSRAYTAACALKRAASPKLEKEDSERTHGEVKNAVQKSSLSHDGHHEGISSPDHILSGTSTKDSHEKEKTYAWVNQVNSTNFTEQSESKGTCMCAEESPNGIIPNVEHDCDSSCAEGTNTGRDSMLHKSCEQGACSEIKNHKIESLRNDTRTAKAFLENDDALETQYGSAVWDIFRRQDVPVLMEYLKKHYREFRHINNLPVNSIIHPIHDQTLYLNERHKKQLKEEFGIEPWTFEQHLGEAVFIPAGCPHQVRNRQSCIKVALDFVSPENVQECVRLTEEFRLLPKKHRSKEDILEIKKMALYAANAAITEAMRLMRRI 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1982g00009 387 Gene3D Cupin 182 359 - -
Pral1982g00009 387 SMART cupin_9 21 350 IPR003347 -
Pral1982g00009 387 SUPERFAMILY Clavaminate synthase-like 234 370 - -
Pral1982g00009 387 MobiDBLite consensus disorder prediction 44 66 - -
Pral1982g00009 387 MobiDBLite consensus disorder prediction 82 99 - -
Pral1982g00009 387 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 206 383 IPR045109 GO:0032454|GO:0033169
Pral1982g00009 387 ProSiteProfiles JmjC domain profile. 154 350 IPR003347 -
Pral1982g00009 387 MobiDBLite consensus disorder prediction 15 41 - -
Pral1982g00009 387 Pfam JmjC domain, hydroxylase 234 333 IPR003347 -
Pral1982g00009 387 FunFam Transcription factor jumonji (JmjC) domain-containing protein 172 359 - -
Pral1982g00009 387 MobiDBLite consensus disorder prediction 15 69 - -
Pral1982g00009 387 MobiDBLite consensus disorder prediction 81 131 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1982g00009 Pral-Chr1982 39028 41938 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Pral1982g00009 JmjC 3.8e-17 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1982g00009 K15601 - gmx:100800662 356.681