Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1982g00008 ATGTGTGCACTCTATGACAGGAAGAATGAAGGATTGACTTCTTGTAGGAAAAAGCCAAAACGGCGCTGCCTGGATACGAACAAGGGTTCTAAAAGCCCTAGAAAAGAAGACACTATCGTGGGAGACTATACTGTACTTAAAAGCCAGGTATCAGAGGAAGAGAATATGAATGAACAGCGGAATGGTTCTGGAGATTTGGGACCCTCAAGAGCATATACTGCAGCTTGCGCTCTAAAACGTGCAGCTTCTCCCAAACTTGAAAAAGAAGACTCTGAACGGACGCATGGTGAAGTTAAGAATGCTGTCCAAAAAAGCTCGTTATCACATGATGGACATCATGAAGGAATTTCATCCCCTGACCATATTCTGTCTGGAACATCCACAAAAGACAGTCATGAAAAAGAAAAAACTTATGAACAATCTGAATCAAAAGGCACGTGCATGTGTGCTGAGGAGTCTCCTAATGGAATCATTCCCAACGTTGAGCATGATTGTGACAGTTCCTGTGCTGAGGGGACTAACACGGGTCGTGACTCCATGCTGCACAAGTCTTGTGAACAAGGGGCATGTTCTGAAATCAAGAATCACAAAATTGAGTCACTTAGAAATGATACGAGAACAGCAAAAGCTTTCCTTGAAAATGATGATGCGTTAGAGACCCAATACGGGAGTGCTGTATGGGACATATTTCGCAGGCAAGATGTGCCGGTGCTGATGGAGTACCTGAAAAAACACTACAGAGAATTCCGCCACATAAATAATCTTCCTGTGAATTCTATAATACATCCAATTCATGACCAGACTCTTTATCTAAACGAAAGACATAAAAAGCAGCTAAAGGAAGAATTTGGCATTGAACCATGGACATTTGAGCAACACCTTGGCGAGGCTGTTTTCATACCTGCAGGGTGCCCGCATCAAGTGAGGAATAGACAGTCTTGCATAAAAGTGGCTCTAGACTTTGTTTCACCTGAAAATGTTCAAGAGTGTGTTCGATTGACGGAGGAATTTCGGCTGCTTCCGAAGAAACATAGATCGAAGGAAGATATACTGGAGATAAAGAAGATGGCACTGTATGCTGCCAACGCTGCTATAACTGAAGCCATGAGATTAATGCGGAGGATATGA 1128 0.4291 MCALYDRKNEGLTSCRKKPKRRCLDTNKGSKSPRKEDTIVGDYTVLKSQVSEEENMNEQRNGSGDLGPSRAYTAACALKRAASPKLEKEDSERTHGEVKNAVQKSSLSHDGHHEGISSPDHILSGTSTKDSHEKEKTYEQSESKGTCMCAEESPNGIIPNVEHDCDSSCAEGTNTGRDSMLHKSCEQGACSEIKNHKIESLRNDTRTAKAFLENDDALETQYGSAVWDIFRRQDVPVLMEYLKKHYREFRHINNLPVNSIIHPIHDQTLYLNERHKKQLKEEFGIEPWTFEQHLGEAVFIPAGCPHQVRNRQSCIKVALDFVSPENVQECVRLTEEFRLLPKKHRSKEDILEIKKMALYAANAAITEAMRLMRRI 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1982g00008 375 MobiDBLite consensus disorder prediction 82 99 - -
Pral1982g00008 375 MobiDBLite consensus disorder prediction 15 69 - -
Pral1982g00008 375 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 147 371 IPR045109 GO:0032454|GO:0033169
Pral1982g00008 375 Pfam JmjC domain, hydroxylase 222 321 IPR003347 -
Pral1982g00008 375 ProSiteProfiles JmjC domain profile. 142 338 IPR003347 -
Pral1982g00008 375 MobiDBLite consensus disorder prediction 126 141 - -
Pral1982g00008 375 MobiDBLite consensus disorder prediction 44 66 - -
Pral1982g00008 375 Gene3D Cupin 168 347 - -
Pral1982g00008 375 MobiDBLite consensus disorder prediction 81 148 - -
Pral1982g00008 375 MobiDBLite consensus disorder prediction 15 41 - -
Pral1982g00008 375 FunFam Transcription factor jumonji (JmjC) domain-containing protein 159 347 - -
Pral1982g00008 375 SUPERFAMILY Clavaminate synthase-like 222 358 - -
Pral1982g00008 375 SMART cupin_9 21 338 IPR003347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1982g00008 Pral-Chr1982 39028 41938 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Pral1982g00008 JmjC 3.6e-17 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1982g00008 K15601 - lang:109335468 350.132