Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1980g00006 ATGGCGGACGATTCAATTGATCACGCCTCACTCATTCCAGCATCTGAATTACTTTTTCATACTGTCCTTAGTATATCTGATGTCACCAGAACAGCCAATCAGATTCTGATTCAGAAGGATAATTTCAGAAAACTCTCAACTTACCTGGAGAAAGTCTCATTAATATTAAAAGGACTATCAAAAGAAGACATACACCATGCAGAAAGCTTGAAAAATTCCCTGGGTGTCCTGAACCAAGAAGTTAAAGTTGCTAGACAGCTGGTTTCTGAGTGCAACTGCAAGAGTAAGATTTATCTTTTGATCAGTTGCAGAAAGATTGCTGAGAATTTGGAGTGTTGTACGAAAAACATAAGCCGAGCAGTGAGCCTCATCCCCCTCACCTCTTTGGATGTTTCTTCTGGTCTAAGTAAACAAATAAGTGAGCTATGCCAGAACATGTTAGATGATGAGTACAGAGTAACTGCAGCAGAAGAGGAAATTCTGGAGAAACTTGAGTTAGCAATACAAGAAGGAAATGCTGAGCGATCTCATGCAAATCAGTTGCTAGCTCGTATTGTGGATGTCATTGGGATCTCAACTGAGCATGCTGTTATAAAGAGAGAATTTAAAGAGTTGAAAGGTGACATGCAAATTGCCGCGTCCAGAAGAGATATAGCAGAAGCTCTCCATATGGAGCAGATTGTTGGATTGCTTGAAAAAGCTGATTCCGTTACTTCATCACAAGATAAGGAGAAGAGGTATTTTGAAAAGCGAAACTCCCTGGGACGACAACTGTTGGAGCCGTTGCATTCGTTTTACTGTCCAATCTCACTTGATATCATGGAAGATCCTGTGGAGACTTCTTCCGGCAAGACATTTGAGAGAAAGGCAATAGAGAAGTGGCTTGCAGAAGGGAACAACAACTGTCCCTTAACCATGTTGCCTCTGGATGCTTCAAAATTAAGACCTAATAAGACTCTTCGACAGTCAATTCAAGAATGGAAAGATAGGAACACCATTATTACCCTTTCGGCTCTTAAGTCCAAACTTGAGAGTGATGATGAAGAGGAAATGCTTAAATCCTTGGAAAAATTGCAGGGCCTCTGCTTGGAAAGACAGATGCACCGGGAATGGGTAAAAATGGAGAATTACATCACAACTCTGATCAAGCTCCTCGGTGCTAAGAATAGAGAAATAAGAAAGCGTGTTCTCTCCATCCTGTCTTTGCTTGCAAAGGACAACGAAGAGAATAAGGAAGATATTGCTAAAGTTGATAATGCACTAGAATCAATTGTTCGCTCACTTGCACGTCAAATAGAGGAAAGCAAGCTAGCAGTGGAGTTGCTCTTAGAATTGTCTAGAAGTACTGCAGTGCGTGATCTCATAGGTGATGTTCAAGGAAGCATGCTCCTCCTGGTAAGAATGTTAAGCAGTGATGATGTTGAAGCAGACCACAATGCAAGTGAGCTTCTGGATAACCTCTCTTTCCTTAACCAGAATGTTATAGAGATGGCGAAAGCAAATTACCTCAAGCCTTTGCTGCGGAACCTTTCTTCAGGAACAGAAAATGTGAAGATAATCATGGCCAAAACTTTATCAGAGATTGAATTGACTGACCAGAATAAAATATCAATAGTCAGAGATGGGGCACTGCAGCCACTTCTTCAGTTGCTCTCTAATTCTGATGTGAAAATCAAGGAAATAGCTGTGAAAGCTCTTCTGCAGTTTTCAAGCTTGCCAGAAAATGGGCTACATATGATTAGGGAGGGTGTTGCTCAATCACTATTTGAGCTGCTATATCGTCACAGTTTACAGTCACCGACTCTGCGGGAACAGGCGGCTGCCACTATGATGCATCTTGCTATGTCAACTACTCATCAACGAGCTGATGAAGTTCAGGTTTCATTGTTAGATTCTGAGGATGACGTATTTAAATTCTTCTCACTTGTTTCCTTCACAGGACCTGATATACAAAGCAAGATTCTGAAAACTTTCATGGCAATGTGCCAATCTCCCTCTGGTCTCACCATCAGAGAAAGGTTAAGACAGCTCTCAGCTGTCCAAGTATTAGTTCACTTGTTAGAGCTCGATAACCAAACTGTGCGGGCAAATGCCATGAAGCTGTTCTATTACTTAACAGAAGGCGGTGATTGCAGAAACTTTACATCACATGTAACTGCAAGGTGTATTAATGTCTTGCTCACCATCATCAGGACTACCGATGATGCAGAAGAGATTGTTTCTGCTATGGGTATCATCTCAAGACTCCCAAAGGAACCCCATATAAACCAGTGGCTTTTAGATTCTGGCGCAGTTAAAATTATCTTGGATTGTCTCTTGGATCAACATAAACATGCCTCGCACAAACGGCAACTCATTGAGAACTCTGTTCAAGCTCTTTGCCGTTTTACTGTCTCAACAAACGTAGAGTGGCAGAAGACAATAGCTCAAGAGGGCATCATCCCTATCCTGGTGCAATTGCTGGATTCCGGGACATCTCTGTCGAAACAACATGCAGCCATTTCAATCAAGCAGTTTTCAGAAAGCTCACGACTCTTAAGCAAGCCTATAAAAAAGCCAGGTATATTCAAATTCTGCTTCGTAGCTTATGAAACCGGTTGCCCAGCACACCAGGGCGCCTGTACAGTTGAGTCTTCATTCTGTATGATAGAGGCTGATGCTTTGAAGCCCCTTGTGAGGATGCTTGAAGAGCAAGATATTGGAACATGCGAAGCTTCCTTAGATGCACTTTTGACTTTGATTCATGGGGAAGCACCACCGGGTGGGTGTAAGGTACTTGCAGAGGCAAATGCTATTACTCCGCTGTTAAATTTATTGAGTCTTCAGTCTGCCAGATTGGTGGAAAAAATTCTAGTAGCTTTAGAGAAAATATTTCTAGTCGATGAAATAAAGATTAAATATAAAGCTTTAGCCACGATGCCATTGGTAGAGGTAACCCAGAGGAAAGATAGTCGCTTGAGAAGTCTTGCTGCCAGAGTCCTTGCACAATTGGGTGTACTTGAGAAACAGTCTTCTTATTTTTAA 3024 0.418 MADDSIDHASLIPASELLFHTVLSISDVTRTANQILIQKDNFRKLSTYLEKVSLILKGLSKEDIHHAESLKNSLGVLNQEVKVARQLVSECNCKSKIYLLISCRKIAENLECCTKNISRAVSLIPLTSLDVSSGLSKQISELCQNMLDDEYRVTAAEEEILEKLELAIQEGNAERSHANQLLARIVDVIGISTEHAVIKREFKELKGDMQIAASRRDIAEALHMEQIVGLLEKADSVTSSQDKEKRYFEKRNSLGRQLLEPLHSFYCPISLDIMEDPVETSSGKTFERKAIEKWLAEGNNNCPLTMLPLDASKLRPNKTLRQSIQEWKDRNTIITLSALKSKLESDDEEEMLKSLEKLQGLCLERQMHREWVKMENYITTLIKLLGAKNREIRKRVLSILSLLAKDNEENKEDIAKVDNALESIVRSLARQIEESKLAVELLLELSRSTAVRDLIGDVQGSMLLLVRMLSSDDVEADHNASELLDNLSFLNQNVIEMAKANYLKPLLRNLSSGTENVKIIMAKTLSEIELTDQNKISIVRDGALQPLLQLLSNSDVKIKEIAVKALLQFSSLPENGLHMIREGVAQSLFELLYRHSLQSPTLREQAAATMMHLAMSTTHQRADEVQVSLLDSEDDVFKFFSLVSFTGPDIQSKILKTFMAMCQSPSGLTIRERLRQLSAVQVLVHLLELDNQTVRANAMKLFYYLTEGGDCRNFTSHVTARCINVLLTIIRTTDDAEEIVSAMGIISRLPKEPHINQWLLDSGAVKIILDCLLDQHKHASHKRQLIENSVQALCRFTVSTNVEWQKTIAQEGIIPILVQLLDSGTSLSKQHAAISIKQFSESSRLLSKPIKKPGIFKFCFVAYETGCPAHQGACTVESSFCMIEADALKPLVRMLEEQDIGTCEASLDALLTLIHGEAPPGGCKVLAEANAITPLLNLLSLQSARLVEKILVALEKIFLVDEIKIKYKALATMPLVEVTQRKDSRLRSLAARVLAQLGVLEKQSSYF 1007
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1980g00006 1007 SUPERFAMILY ARM repeat 503 858 IPR016024 -
Pral1980g00006 1007 Gene3D - 435 859 IPR011989 -
Pral1980g00006 1007 Gene3D - 334 434 IPR011989 -
Pral1980g00006 1007 Pfam Armadillo/beta-catenin-like repeat 532 566 IPR000225 GO:0005515
Pral1980g00006 1007 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 542 584 IPR000225 GO:0005515
Pral1980g00006 1007 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 15 1007 - -
Pral1980g00006 1007 Pfam U-box domain 265 331 IPR003613 GO:0004842|GO:0016567
Pral1980g00006 1007 ProSiteProfiles U-box domain profile. 260 334 IPR003613 GO:0004842|GO:0016567
Pral1980g00006 1007 SUPERFAMILY RING/U-box 250 333 - -
Pral1980g00006 1007 Gene3D - 869 1004 IPR011989 -
Pral1980g00006 1007 CDD RING-Ubox_PUB 265 314 IPR045210 -
Pral1980g00006 1007 SMART arm_5 531 571 IPR000225 GO:0005515
Pral1980g00006 1007 SMART arm_5 801 841 IPR000225 GO:0005515
Pral1980g00006 1007 SMART arm_5 666 707 IPR000225 GO:0005515
Pral1980g00006 1007 SMART arm_5 407 447 IPR000225 GO:0005515
Pral1980g00006 1007 SMART arm_5 365 405 IPR000225 GO:0005515
Pral1980g00006 1007 SMART arm_5 919 959 IPR000225 GO:0005515
Pral1980g00006 1007 SMART arm_5 448 489 IPR000225 GO:0005515
Pral1980g00006 1007 SMART arm_5 875 915 IPR000225 GO:0005515
Pral1980g00006 1007 SUPERFAMILY ARM repeat 880 998 IPR016024 -
Pral1980g00006 1007 SUPERFAMILY ARM repeat 336 489 IPR016024 -
Pral1980g00006 1007 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 241 333 IPR013083 -
Pral1980g00006 1007 SMART Ubox_2 264 327 IPR003613 GO:0004842|GO:0016567
Pral1980g00006 1007 Coils Coil 161 181 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1980g00006 Pral-Chr1980 18015 22717 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1980g00006 263 1007 U-box Gene Family AT1G76390 27.582 3.24e-63 228
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1980g00006 - - pcin:129302416 1632.85