Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1980g00002 ATGATGTTGTTTCAGCCACTAAATTCAATTTTTGTTGCTGTCTTTTTTAAGATCTTTCGCTCATTTTTTTCCCTGTTACTGAAAGGGAATATTGGATTGGTTAAACCTATGGAATTAGGTTCAAATCCAAAGCCTCCTATGTTGGAGAAAAAGGCAAGGCCTCAGAAAGATCAAGCCTTGAACTGTCCACGGTGCAATTCAACCAACACCAAATTCTGCTACTACAACAACTATAGCCTCTCTCAGCCCAGATACTTCTGTAAGACTTGCAGAAGGTATTGGACTGAAGGTGGCTCTCTCAGGAATGTTCCTGTGGGTGGAGGTTCCAGAAAAAACAAGAGACCTTCTTCTTCTTCTTCATCTTCTTCAGCAGCACCAAAGAAGCTTCCAGAACCTTCTCCTCCGAACCCCACCAGCAACAAGATCCATCAAGCCCAGGATCTTAACCTGGCATACCCAACACCCCCATCACTCCCTCCACAACCTGAGATTTCCGGCAGCTCAAATTCTTCGAGGGGTTTGATGAATTCCTTGATGCCCATGTCGGTTTCATCAGATGGAGGCATGATGTATAACAGTAATAGTAATTCAGCCCATCATGGGTTTCCTTTGGAGTTCAAGCCTCATCATCAAGGGCTTAATTTTAGCTTTGAGGGGTTTGAGAATAATGGGTTTGGAAGTGGTCTTCATCAGGGAATGCAATTGGGTAATTCTGCTGGTGGCGCAAGGATCTTGTTTCCTATTGAAGATTTGAAGCACGTGCCAAGCACCACCCCTAGTCATGAGTTTGATCAGCAAAATACTAGAGGAAGCCATGGAGATCCGAGTGGGTTTTGGAATGGCATGTTAGGTGGAGGAGCATGGTAG 867 0.4452 MMLFQPLNSIFVAVFFKIFRSFFSLLLKGNIGLVKPMELGSNPKPPMLEKKARPQKDQALNCPRCNSTNTKFCYYNNYSLSQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNKRPSSSSSSSSAAPKKLPEPSPPNPTSNKIHQAQDLNLAYPTPPSLPPQPEISGSSNSSRGLMNSLMPMSVSSDGGMMYNSNSNSAHHGFPLEFKPHHQGLNFSFEGFENNGFGSGLHQGMQLGNSAGGARILFPIEDLKHVPSTTPSHEFDQQNTRGSHGDPSGFWNGMLGGGAW 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1980g00002 288 MobiDBLite consensus disorder prediction 111 127 - -
Pral1980g00002 288 MobiDBLite consensus disorder prediction 258 274 - -
Pral1980g00002 288 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 49 211 IPR045174 GO:0003700|GO:0006355
Pral1980g00002 288 ProSitePatterns Zinc finger Dof-type signature. 62 98 IPR003851 GO:0003677|GO:0006355
Pral1980g00002 288 MobiDBLite consensus disorder prediction 101 178 - -
Pral1980g00002 288 MobiDBLite consensus disorder prediction 257 288 - -
Pral1980g00002 288 ProSiteProfiles Zinc finger Dof-type profile. 60 114 IPR003851 GO:0003677|GO:0006355
Pral1980g00002 288 MobiDBLite consensus disorder prediction 163 178 - -
Pral1980g00002 288 Pfam Dof domain, zinc finger 57 114 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1980g00002 Pral-Chr1980 2367 4111 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1980g00002 49 288 C2C2-Dof Transcription Factor Family AT4G24060 40.000 1.76e-47 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Pral1980g00002 zf-Dof 1.5e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1980g00002 - - pcin:129300981 488.419