Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral197g00010 ATGGTGAGCCCAAAATCGCAAAGCCCCGAGAGCGTTCCTTGCGATTTCTGTACGCAACAAACAGCTGTTCTGTATTGCAGAGCTGACTCTGCCAAGCTCTGTTTGTTCTGCGATCAACACGTTCACTCCGCTAACTTGCTCTCTCGCAAGCACTTGCGCTCTCAGATCTGCGATAATTGCTCCTCCGAGCCTGTCTCCGTCCGGTGTAACACCGACAACCTTGTTCTCTGCCAAGACTGCGATTGGGACGCTCATGCCTCATGCTCCGTCGCCGCTTCTCACCATCGTACGCCTGTTGAGGGTTTCACGGGGTGTCCTTCTTCATCTGAACTCGCTTCGCTTTGGGGATTTCAATTTGAGAATAAGACTTTAGAACAATCTCCTTCTTCTTTGATTCAAAACTGGGGTGATTATCGGGATTTATTTGTGCCACTTGAGTCCTGCCCTTTTAAATCCGATGGCGTTCCTCTTGAAGTTCATGACGTCATGGTTCCAAGAGAAACCAGTATGCTTTACCCGTCTCGGGGTTTCCAGGCGGTCTGTAACGCTACAAAGAAACAGACTCCCTGCTGTGGGAAGCAGAAACAGGTTATACGCAAGCAGTTGGTTGAATTGCTCAAGAGGGATTCGGTGGTTGTTGATGTTGGTGGCGGTGGCGGTGGCGGTGGCGATGGCGGTGATGTTGACGGTGAAGGTGGAATAGCTCGGGTAAGTGCTGCTAATGAGGCTGAGAATTTGGTTCCCGAAGCGCCAAGAAAGATCCAGGGAGATGGGCAGCCATTTGTTTTGGGAAATGATGTTCAAGGATTGCAGGCGATTAACGCTTCTCAGCAACCAATGCAGCACCAAGCGTCAGTTAATTCCCCATCTATGATGCCTTCGCAGTTGCATCATATTGAAGGCGATAAATTGTGGCACAATAATTGCAAGAGGCACTCTGTTCAGATTTGGGATTTCCATTCTGGACGACTGAGGGATCAGGAAGAATCAATTGCACTTGAAGCTGCCTATGTAGCAAATGATGGCGGATTTGCAGCTAAGAATTTTAGTGAACTTATCAGAGAATCATCCATGACTGACACAAAATTGTTGCAAGAGATATACGATATGAATATTGCATACGATGATATGGCATCATATAACAACCTGTCAAATAACCCAACAGCAGCAAGTCAGGGGCCTGCAGCAACATCAGAGAGCAACAACCTACCAACAAGGAAGCAATCTGGCAATGCCGCTGCTCCTGGAAAGCACAACGTTAACTGTAACGTCAAGGAGACACAGATTGGGGAACATCCTTTGCTTGTTACAGATGACAACATGGGAAAAGCCGGACGAAGCAAGGCTGACATGGACTTGATGGCCCAAAACAGGGGCACTGCAATGCTCCGTTACAAGGAGAAAAAGAAAACTCGAAGATACGAGAAGCACATAAGATACGAGTCTAGGAAGATGAGGGCTGATACTCGGAAACGAGTCAAAGGCCGATTTGTGAAAGCTAGTGACGCGGACGTACCTCCTAATGGTTATTAA 1533 0.4781 MVSPKSQSPESVPCDFCTQQTAVLYCRADSAKLCLFCDQHVHSANLLSRKHLRSQICDNCSSEPVSVRCNTDNLVLCQDCDWDAHASCSVAASHHRTPVEGFTGCPSSSELASLWGFQFENKTLEQSPSSLIQNWGDYRDLFVPLESCPFKSDGVPLEVHDVMVPRETSMLYPSRGFQAVCNATKKQTPCCGKQKQVIRKQLVELLKRDSVVVDVGGGGGGGGDGGDVDGEGGIARVSAANEAENLVPEAPRKIQGDGQPFVLGNDVQGLQAINASQQPMQHQASVNSPSMMPSQLHHIEGDKLWHNNCKRHSVQIWDFHSGRLRDQEESIALEAAYVANDGGFAAKNFSELIRESSMTDTKLLQEIYDMNIAYDDMASYNNLSNNPTAASQGPAATSESNNLPTRKQSGNAAAPGKHNVNCNVKETQIGEHPLLVTDDNMGKAGRSKADMDLMAQNRGTAMLRYKEKKKTRRYEKHIRYESRKMRADTRKRVKGRFVKASDADVPPNGY 510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral197g00010 510 CDD Bbox1_BBX-like 13 56 - -
Pral197g00010 510 ProSiteProfiles CCT domain profile. 458 500 IPR010402 GO:0005515
Pral197g00010 510 ProSiteProfiles Zinc finger B-box type profile. 9 56 IPR000315 GO:0008270
Pral197g00010 510 Pfam CCT motif 458 500 IPR010402 GO:0005515
Pral197g00010 510 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 13 502 - -
Pral197g00010 510 SMART bboxneu5 57 99 IPR000315 GO:0008270
Pral197g00010 510 SMART bboxneu5 9 56 IPR000315 GO:0008270
Pral197g00010 510 ProSiteProfiles Zinc finger B-box type profile. 52 99 IPR000315 GO:0008270
Pral197g00010 510 MobiDBLite consensus disorder prediction 385 419 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral197g00010 Pral-Chr197 126037 129521 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral197g00010 8 506 C2C2-CO-like Transcription Factor Family AT1G28050 40.472 1.16e-96 298
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Pral197g00010 CCT 1.9e-15 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral197g00010 - - pcin:129307671 828.165