Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral197g00009 ATGGTGAGCCCAAAATCGCAAAGCCCCGAGAGCGTTCCTTGCGATTTCTGTACGCAACAAACAGCTGTTCTGTATTGCAGAGCTGACTCTGCCAAGCTCTGTTTGTTCTGCGATCAACACGTTCACTCCGCTAACTTGCTCTCTCGCAAGCACTTGCGCTCTCAGATCTGCGATAATTGCTCCTCCGAGCCTGTCTCCGTCCGGTGTAACACCGACAACCTTGTTCTCTGCCAAGACTGCGATTGGGACGCTCATGCCTCATGCTCCGTCGCCGCTTCTCACCATCGTACGCCTGTTGAGGGTTTCACGGGGTGTCCTTCTTCATCTGAACTCGCTTCGCTTTGGGGATTTCAATTTGAGAATAAGACTTTAGAACAATCTCCTTCTTCTTTGATTCAAAACTGGGGTGATTATCGGGATTTATTTGTGCCACTTGAGTCCTGCCCTTTTAAATCCGATGGCGTTCCTCTTGAAGTTCATGACGTCATGGTTCCAAGAGAAACCAGTATGCTTTACCCGTCTCGGGGTTTCCAGGCGGTCTGTAACGCTACAAAGAAACAGACTCCCTGCTGTGGGAAGCAGAAACAGGTTATACGCAAGCAGTTGGTTGAATTGCTCAAGAGGGATTCGGTGGTTGTTGATGTTGGTGGCGGTGGCGGTGGCGGTGGCGATGGCGGTGATGTTGACGGTGAAGGTGGAATAGCTCGGGTAAGTGCTGCTAATGAGGCTGAGAATTTGGTTCCCGAAGCGCCAAGAAAGATCCAGGGAGATGGGCAGCCATTTGTTTTGGGAAATGATGTTCAAGGATTGCAGGCGATTAACGCTTCTCAGCAACCAATGCAGCACCAAGCGTCAGTTAATTCCCCATCTATGATGCCTTCGCAGTTGCATCATATTGAAGGCGATAAATTGTGGCACAATAATTGCAAGAGGCACTCTGTTCAGATTTGGGATTTCCATTCTGGACGACTGAGGGATCAGGAAGAATCAATTGCACTTGAAGCTGCCTATGTAGCAAATGATGGCGGATTTGCAGCTAAGAATTTTAGTGAACTTATCAGAGAATCATCCATGACTGACACAAAATTGTTGCAAGAGATATACGATATGAATATTGCATACGATGATATGGCATCATATAACGGGATGACGTGTAATCTAATGAAAATGCAGAACCTGTCAAATAACCCAACAGCAGCAAGTCAGGGGCCTGCAGCAACATCAGAGAGCAACAACCTACCAACAAGGAAGCAATCTGGCAATGCCGCTGCTCCTGGAAAGCACAACGTTAACTGTAACGTCAAGGAGACACAGATTGGGGAACATCCTTTGCTTGTTACAGATGACAACATGGGAAAAGCCGGACGAAGCAAGGCTGACATGGACTTGATGGCCCAAAACAGGGGCACTGCAATGCTCCGTTACAAGGAGAAAAAGAAAACTCGAAGATACGAGAAGCACATAAGATACGAGTCTAGGAAGATGAGGGCTGATACTCGGAAACGAGTCAAAGGCCGATTTGTGAAAGCTAGTGACGCGGACGTACCTCCTAATGGTTATTAA 1563 0.4766 MVSPKSQSPESVPCDFCTQQTAVLYCRADSAKLCLFCDQHVHSANLLSRKHLRSQICDNCSSEPVSVRCNTDNLVLCQDCDWDAHASCSVAASHHRTPVEGFTGCPSSSELASLWGFQFENKTLEQSPSSLIQNWGDYRDLFVPLESCPFKSDGVPLEVHDVMVPRETSMLYPSRGFQAVCNATKKQTPCCGKQKQVIRKQLVELLKRDSVVVDVGGGGGGGGDGGDVDGEGGIARVSAANEAENLVPEAPRKIQGDGQPFVLGNDVQGLQAINASQQPMQHQASVNSPSMMPSQLHHIEGDKLWHNNCKRHSVQIWDFHSGRLRDQEESIALEAAYVANDGGFAAKNFSELIRESSMTDTKLLQEIYDMNIAYDDMASYNGMTCNLMKMQNLSNNPTAASQGPAATSESNNLPTRKQSGNAAAPGKHNVNCNVKETQIGEHPLLVTDDNMGKAGRSKADMDLMAQNRGTAMLRYKEKKKTRRYEKHIRYESRKMRADTRKRVKGRFVKASDADVPPNGY 520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral197g00009 520 Pfam CCT motif 468 510 IPR010402 GO:0005515
Pral197g00009 520 ProSiteProfiles CCT domain profile. 468 510 IPR010402 GO:0005515
Pral197g00009 520 CDD Bbox1_BBX-like 13 56 - -
Pral197g00009 520 ProSiteProfiles Zinc finger B-box type profile. 9 56 IPR000315 GO:0008270
Pral197g00009 520 SMART bboxneu5 57 99 IPR000315 GO:0008270
Pral197g00009 520 SMART bboxneu5 9 56 IPR000315 GO:0008270
Pral197g00009 520 ProSiteProfiles Zinc finger B-box type profile. 52 99 IPR000315 GO:0008270
Pral197g00009 520 MobiDBLite consensus disorder prediction 396 428 - -
Pral197g00009 520 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 13 512 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral197g00009 Pral-Chr197 126036 129521 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral197g00009 8 516 C2C2-CO-like Transcription Factor Family AT1G28050 39.499 1.33e-94 293
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Pral197g00009 CCT 1.9e-15 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral197g00009 - - pcin:129307671 820.076