Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral197g00008 ATGGTGAGCCCAAAATCGCAAAGCCCCGAGAGCGTTCCTTGCGATTTCTGTACGCAACAAACAGCTGTTCTGTATTGCAGAGCTGACTCTGCCAAGCTCTGTTTGTTCTGCGATCAACACGTTCACTCCGCTAACTTGCTCTCTCGCAAGCACTTGCGCTCTCAGATCTGCGATAATTGCTCCTCCGAGCCTGTCTCCGTCCGGTGTAACACCGACAACCTTGTTCTCTGCCAAGACTGCGATTGGGACGCTCATGCCTCATGCTCCGTCGCCGCTTCTCACCATCGTACGCCTGTTGAGGGTTTCACGGGGTGTCCTTCTTCATCTGAACTCGCTTCGCTTTGGGGATTTCAATTTGAGAATAAGACTTTAGAACAATCTCCTTCTTCTTTGATTCAAAACTGGGGTGATTATCGGGATTTATTTGTGCCACTTGAGTCCTGCCCTTTTAAATCCGATGGCGTTCCTCTTGAAGTTCATGACGTCATGGTTCCAAGAGAAACCAGTATGCTTTACCCGTCTCGGGGTTTCCAGGCGGTCTGTAACGCTACAAAGAAACAGACTCCCTGCTGTGGGAAGCAGAAACAGGTTATACGCAAGCAGTTGGTTGAATTGCTCAAGAGGGATTCGGTGGTTGTTGATGTTGGTGGCGGTGGCGGTGGCGGTGGCGATGGCGGTGATGTTGACGGTGAAGGTGGAATAGCTCGGGTAAGTGCTGCTAATGAGGCTGAGAATTTGGTTCCCGAAGCGCCAAGAAAGATCCAGGGAGATGGGCAGCCATTTGTTTTGGGAAATGATGTTCAAGGATTGCAGATTTGGGATTTCCATTCTGGACGACTGAGGGATCAGGAAGAATCAATTGCACTTGAAGCTGCCTATGTAGCAAATGATGGCGGATTTGCAGCTAAGAATTTTAGTGAACTTATCAGAGAATCATCCATGACTGACACAAAATTGTTGCAAGAGATATACGATATGAATATTGCATACGATGATATGGCATCATATAACGGGATGACGTGTAATCTAATGAAAATGCAGAACCTGTCAAATAACCCAACAGCAGCAAGTCAGGGGCCTGCAGCAACATCAGAGAGCAACAACCTACCAACAAGGAAGCAATCTGGCAATGCCGCTGCTCCTGGAAAGCACAACGTTAACTGTAACGTCAAGGAGACACAGATTGGGGAACATCCTTTGCTTGTTACAGATGACAACATGGGAAAAGCCGGACGAAGCAAGGCTGACATGGACTTGATGGCCCAAAACAGGGGCACTGCAATGCTCCGTTACAAGGAGAAAAAGAAAACTCGAAGATACGAGAAGCACATAAGATACGAGTCTAGGAAGATGAGGGCTGATACTCGGAAACGAGTCAAAGGCCGATTTGTGAAAGCTAGTGACGCGGACGTACCTCCTAATGGTTATTAA 1431 0.4787 MVSPKSQSPESVPCDFCTQQTAVLYCRADSAKLCLFCDQHVHSANLLSRKHLRSQICDNCSSEPVSVRCNTDNLVLCQDCDWDAHASCSVAASHHRTPVEGFTGCPSSSELASLWGFQFENKTLEQSPSSLIQNWGDYRDLFVPLESCPFKSDGVPLEVHDVMVPRETSMLYPSRGFQAVCNATKKQTPCCGKQKQVIRKQLVELLKRDSVVVDVGGGGGGGGDGGDVDGEGGIARVSAANEAENLVPEAPRKIQGDGQPFVLGNDVQGLQIWDFHSGRLRDQEESIALEAAYVANDGGFAAKNFSELIRESSMTDTKLLQEIYDMNIAYDDMASYNGMTCNLMKMQNLSNNPTAASQGPAATSESNNLPTRKQSGNAAAPGKHNVNCNVKETQIGEHPLLVTDDNMGKAGRSKADMDLMAQNRGTAMLRYKEKKKTRRYEKHIRYESRKMRADTRKRVKGRFVKASDADVPPNGY 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral197g00008 476 CDD Bbox1_BBX-like 13 56 - -
Pral197g00008 476 ProSiteProfiles Zinc finger B-box type profile. 9 56 IPR000315 GO:0008270
Pral197g00008 476 SMART bboxneu5 57 99 IPR000315 GO:0008270
Pral197g00008 476 SMART bboxneu5 9 56 IPR000315 GO:0008270
Pral197g00008 476 ProSiteProfiles Zinc finger B-box type profile. 52 99 IPR000315 GO:0008270
Pral197g00008 476 MobiDBLite consensus disorder prediction 352 384 - -
Pral197g00008 476 ProSiteProfiles CCT domain profile. 424 466 IPR010402 GO:0005515
Pral197g00008 476 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 13 468 - -
Pral197g00008 476 Pfam CCT motif 424 466 IPR010402 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral197g00008 Pral-Chr197 126035 129521 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral197g00008 6 468 C2C2-CO-like Transcription Factor Family AT2G33500 40.645 6.48e-96 293
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Pral197g00008 CCT 1.7e-15 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral197g00008 - - pcin:129307671 747.273