Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1979g00004 ATGGGTGGTGCGCCTTCTTTCAAGCCATTCACCAGATTTTTCTTATTCTTCTTCGTCCTCCCCACCACAATCATACTCCTTGCACCGACTGCTGCTGGTGAAACCCCATCTTCTCCTTTAGGCTGGACCGATTATGAAAACGCCACGGGAAAAAATCCGCCTCCGCCTCCGCCGCCATCGGGAAGTCAACGTGGCGGAGGAGGAAGAGGGTCTCCGTTTAAGCCGAGCGTGGTCGTTCTAGTTGGGGTGATGACAACCCTGTTTTTTCTTACCTTCCTCCTCCTCCTCTATGTTAAGCACTGTAAACCAGAGGAGGAGCCGCTAAGGAATTCGCATACAAGCGCTGGTTATTCAGGGAGGAAGAACTCCGGCATTGACAGGGTGGTGATCGAGTCGTTACCCATTTTCAGATTCGGATCGTTAAGGGGCCAAAAAGAGGGGCTTGAATGCGCCGTTTGCCTGACCCCGTTTGAGTCCGTGGAGGTTCTTCGGTTGCTTCCAAAATGCAAGCACGCCTTCCATGTCGAGTGCGTGGATACGTGGCTGGACGCGCATTCCACTTGCCCGCTTTGCCGGTACCGGGTCGACCCAGAAGACATCCTCCTGGTTGGGGACGCCAAAATTTGGCCGCAGAATCAACCCATTCCACCGATACAAGAGATTTCTGAAAATCCGCAGCATTGTACAGACATAGAGAGCGGCCTTGGACAGGATTCACAGAATCTGTTCGATTCAAACTCGATTCTAAGGCGCGTCTCCGGGAGGCACTCATCCGTAGGGGAGAGAGGAGGAGGAGGAGGAGGGGCTGGTGGTGGTGGGCTCTTAAAGATTATATTCCAGCATCGAATCAGCGTGGACGGCGAAACGACGCCGACGCCAAGGCAGAAGAAAACGGCGCTGCTTAGGATGTCACTGGACAGTGCAATGTCGACGAAGAGGAAAAGAAACGAGACCGGTAAAGCAAGGGAAGGCAGTGAGTGCGATGGCGCAAGAAAAGATGGGTTACTGCTTACGGAGAAGGAGAAGAAGCACAGGGTGGAACACAGGATCATAGTGTCTCCGTCAGAAAAGGCGAACGGGCTTAATCAGAGATGGAGCGACGTACAGCCGTCGGACTTACTATACCTGACGTCGGAGATGATACTGAGCGAATCGCGTTCCTCATCGGGGCCGTCGCTTCCAGGGCCTCAGCAACAGAATGTGCAGCTGCCACTGTACCGGAGCACAGGAGATACGCGTACGGGGGCAATAAATGTGAGGAGCTTGTCGGAAATCACGGGATTGAGCAGGACGAGGAGAGAGGAAGGGGAGCATCGTCATCGTCGGGCAGAAGAAGAAGAGAGACAGGCGGGAGTAGTATCGAGATGGTTGGCCTGGATCTCTCAGTCGCAACGATCTGTACGGTAG 1407 0.5394 MGGAPSFKPFTRFFLFFFVLPTTIILLAPTAAGETPSSPLGWTDYENATGKNPPPPPPPSGSQRGGGGRGSPFKPSVVVLVGVMTTLFFLTFLLLLYVKHCKPEEEPLRNSHTSAGYSGRKNSGIDRVVIESLPIFRFGSLRGQKEGLECAVCLTPFESVEVLRLLPKCKHAFHVECVDTWLDAHSTCPLCRYRVDPEDILLVGDAKIWPQNQPIPPIQEISENPQHCTDIESGLGQDSQNLFDSNSILRRVSGRHSSVGERGGGGGGAGGGGLLKIIFQHRISVDGETTPTPRQKKTALLRMSLDSAMSTKRKRNETGKAREGSECDGARKDGLLLTEKEKKHRVEHRIIVSPSEKANGLNQRWSDVQPSDLLYLTSEMILSESRSSSGPSLPGPQQQNVQLPLYRSTGDTRTGAINVRSLSEITGLSRTRREEGEHRHRRAEEEERQAGVVSRWLAWISQSQRSVR 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1979g00004 468 MobiDBLite consensus disorder prediction 308 330 - -
Pral1979g00004 468 MobiDBLite consensus disorder prediction 285 330 - -
Pral1979g00004 468 FunFam RING-H2 finger protein ATL43 125 199 - -
Pral1979g00004 468 ProSiteProfiles Zinc finger RING-type profile. 150 192 IPR001841 -
Pral1979g00004 468 CDD RING-H2_EL5-like 149 192 - -
Pral1979g00004 468 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 54 463 - -
Pral1979g00004 468 SUPERFAMILY RING/U-box 128 197 - -
Pral1979g00004 468 MobiDBLite consensus disorder prediction 428 449 - -
Pral1979g00004 468 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 125 199 IPR013083 -
Pral1979g00004 468 SMART ring_2 150 191 IPR001841 -
Pral1979g00004 468 MobiDBLite consensus disorder prediction 34 70 - -
Pral1979g00004 468 Pfam Ring finger domain 149 192 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1979g00004 Pral-Chr1979 18708 20373 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1979g00004 71 459 C3H Transcription Factor Family AT5G05810 43.301 2.12e-82 258
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1979g00004 K19041 - aew:130756379 289.271