Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1979g00003 ATGCTTCCTTTCAGGAGTTTCTATGGGTTTGAGAGCTGGTTAGATCAGAGTGCGTATTCTCAGGAACCCAGCTCATCCATCAAGTCCGTGGAATTGGATAACGGGAAACCAATTCTGAGCGCCACATCAAAGTCTGAGAGGAAGTCGATGGAAGCATGCAAGAGCCATAGAGAAGCTGAGAGGAGACGAAGGCAGCGAATCAACGCCCACCTCTCCACTCTACGTTCCCTCCTCCCTAACGCCGTAAAGTCGGACAAGGCGTCGTTGCTGGCAGAGGTGGTCCGACACGTCAAAGAGCTGAGGAAACAGGCTGATGACGTGACGCGCCATCACGACGGAGACTCGTCGGGCAGCACCATCAGCGGAGAATCTCGGTCGGATCCCGGAGACTCGGAGCAGTGGGCGTTCCCGGGAGAGTCGGACGAGGCAACTGTGAGTTACTGCGACGGAGGCGGAGAGAGGAAACTCGTAAAAGCCACGCTCTGCTGCGAGGACCGGCCCAATCTGAACCGTGATTTAGAGGAGGCCATCCGTTCCGTTCGGGCCAAGGCGGTGCGAGCCGAGATGATGACCATTGGTGGGCGAACCAAGAGTGTGGTGGTTGTCCAATGGACTGCTGGAGAAGAGGAGGTTGGGGCACTGGAACGGGCTTTGACAGCTGTAGTAGAATCGGGCCCTCGTGGGGTCTAG 690 0.5696 MLPFRSFYGFESWLDQSAYSQEPSSSIKSVELDNGKPILSATSKSERKSMEACKSHREAERRRRQRINAHLSTLRSLLPNAVKSDKASLLAEVVRHVKELRKQADDVTRHHDGDSSGSTISGESRSDPGDSEQWAFPGESDEATVSYCDGGGERKLVKATLCCEDRPNLNRDLEEAIRSVRAKAVRAEMMTIGGRTKSVVVVQWTAGEEEVGALERALTAVVESGPRGV 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1979g00003 229 MobiDBLite consensus disorder prediction 114 128 - -
Pral1979g00003 229 MobiDBLite consensus disorder prediction 47 62 - -
Pral1979g00003 229 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 51 100 IPR011598 GO:0046983
Pral1979g00003 229 Coils Coil 170 190 - -
Pral1979g00003 229 Pfam Helix-loop-helix DNA-binding domain 53 100 IPR011598 GO:0046983
Pral1979g00003 229 SMART finulus 57 106 IPR011598 GO:0046983
Pral1979g00003 229 MobiDBLite consensus disorder prediction 40 62 - -
Pral1979g00003 229 PANTHER TRANSCRIPTION FACTOR BHLH30 31 224 IPR045847 GO:0003700|GO:0006355
Pral1979g00003 229 MobiDBLite consensus disorder prediction 102 138 - -
Pral1979g00003 229 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 55 109 IPR036638 GO:0046983
Pral1979g00003 229 Gene3D - 45 112 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1979g00003 Pral-Chr1979 11802 12793 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1979g00003 39 223 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G68810 40.513 1.99e-34 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pral1979g00003 HLH 3.2e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1979g00003 - - gmx:100816394 265.003