Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1977g00001 ATGCAATTACTTATTGAGCGTAACCTTGTAAAGTTTGTCAATGATAAGATTCATGTGCATGATTTGCTACAAGAGATAGGGAGGGGAATCACTACAAATGAGCCAAAGGTCACATATATCTATGATGTATTCTTAAGTTTTAGAGGTGAGGATACTCGTAAATCATTTACTACTCATTTGTATACTGCTCTGAAACAAGCAAGAATTGAGGTCTTCATGGATGAAGAAGGGATTGCAAGGGGAGAACATATTTCAGGTTCATTGCTACGGGCAATTGAATGTTCAAGAATTTCAATCATTATATTCTCAAAGAATTATGCCGGCTCTAGTTGGTGCTTACAAGAATTAGAGAAAATCATGGAGTGTTACAGAACAACTAATCAAGTGGTTTTTCCAATATTCTATGATGTGCAACCGTTTGAAGTTCGTAAACAACAAAATGCTTTTGGAAAAGCATGGGAACGGCTTACAGCAAGATCCTCAAGTAGTAAAGGCAAGCAATTGACAAATAATTTGAAGAGAGTCCTTGTTGAGGCTGCTAACTTATCAGGGTGGGATATGCAAAACTACAGAACTGAGGCTGAGTTACTTGACAATGTTGTTGAAACTATCACAATGAGCCTAGACAACACCAAATACATGTTTGTTGCTCACCATCCAGTGGGTTTGGAGTCTCGCGTGCAAGATATCATTCGATTGCTAAGTAGTGAATCAAATGACACTATCATAATAGGCATTTGGGGGATGGGAGGGATTGGCAAGACCACAGTGGCTAAAGCTATTTATAATGAAATCGGCCAAAGTTTTGTGGTAAAGAGTTTCCTTGCAAATATTAGGAAAGTATGGGAGCAAGATAATGGCCAAGTTTATTTGCAAGAACAACTTCTTTCTAACCTCTTAAAAACAAGAAGGATCAAGCTACCAAATGTAGGAACAGGAGAAACTCTAATCAAGGAAAGTCTTTGTAAAAAAAGAGTATTTCTTGTATTAGATGATGTGAATAATGAAGACCAACTCAAAGTTTTATGTGGAAATCGTGAATGGTTTGGTCAAGGTAGTAGAATAATTATCACTACTAGAGATGAACGTTTGCTTCAAATCCTTCAAGTGGATAAAGTATTTAATGTGAGAGGAATGGAAGATTATGAATCCATTGAGCTTTTCAGTTGGCATGCTTTTAAGCAAGCGTTTCCTAAAAAAAAATTCATCAAACTTTCAAGAAGTGTAGTATCATACTGTAGAGGGCTGCCACTTGCTCTTGAAATCCTTGGCTCATATTTGTTTGATAGAGAAGTACCTTACTGGGAAAGCACTTTGAATAAATTGAAACAAATTCCAAATGGTAAAATATTTGAAATCCTAAAACTAAGCTATGATGGTTTGAGTGACCAAATAGAGAAAGAGTTGTTCCTTGATATATGTTGTTTTTTTATCGGGAAGGAAAGAAGCTATGCTACTCAAGTATTAGATGGTTGTGGGCTTCATGCAGAAATTGGGATCACCCACCTAATTGAGCGAAGCCTTATAAAAGTTGTACAATTGGGAAACAAAAATGTACTTGATATGCATGAACTACTGCGTGATATGGGAAGAGAAATCATTCGTGAGCAAGCACCGAAGGAGCCAGAGAAGCGTGCAAGGTTATGGTTTAATGATGATGTGTTGAATGTCTTGGAAAACAACATTGGAACAATAACGATTGAGGGGTTGTCTTTAAGCATGCCAAGAAACAATTCAGTATCCTTGAGTACCAAGGCATTTAAGAAGATGAAGATGCTTCGTTTACTCAAATTTGATAATGGATGTAATGAAAGAGGTTTTGGACTTAATTCGCTTCCGGGAGACAATTATCCTCTTTGGCAGAATTTTAAAGGTGAAGGATCTTCAATATTCTTGGAAGTTCCTCAAATTGTTGGCAAAACTTTGAAAGGATTGATTCTGTGCATAATCTATTTGTCTTCTCCAGACAATATGACATCTGTATCTCATCCTGTTGGTATCTTGGTATCAAACCATACAAAGGCCACCATGAAATTCTACCAAAAAGATGCAACAACTAGTCCAAATGATGAAGATAATTGGCAAGACTTAATTTTTAATTTGAAGCCTGGTGATAGAGTGGAGGTTATAGTCACTTTTGCATGTGAATTAAGAGTGAAAAATACACTTGTCTATTTAGTGTATGATGAAGATGTTTGCAAGAGAATCATGTATTGA 2217 0.364 MQLLIERNLVKFVNDKIHVHDLLQEIGRGITTNEPKVTYIYDVFLSFRGEDTRKSFTTHLYTALKQARIEVFMDEEGIARGEHISGSLLRAIECSRISIIIFSKNYAGSSWCLQELEKIMECYRTTNQVVFPIFYDVQPFEVRKQQNAFGKAWERLTARSSSSKGKQLTNNLKRVLVEAANLSGWDMQNYRTEAELLDNVVETITMSLDNTKYMFVAHHPVGLESRVQDIIRLLSSESNDTIIIGIWGMGGIGKTTVAKAIYNEIGQSFVVKSFLANIRKVWEQDNGQVYLQEQLLSNLLKTRRIKLPNVGTGETLIKESLCKKRVFLVLDDVNNEDQLKVLCGNREWFGQGSRIIITTRDERLLQILQVDKVFNVRGMEDYESIELFSWHAFKQAFPKKKFIKLSRSVVSYCRGLPLALEILGSYLFDREVPYWESTLNKLKQIPNGKIFEILKLSYDGLSDQIEKELFLDICCFFIGKERSYATQVLDGCGLHAEIGITHLIERSLIKVVQLGNKNVLDMHELLRDMGREIIREQAPKEPEKRARLWFNDDVLNVLENNIGTITIEGLSLSMPRNNSVSLSTKAFKKMKMLRLLKFDNGCNERGFGLNSLPGDNYPLWQNFKGEGSSIFLEVPQIVGKTLKGLILCIIYLSSPDNMTSVSHPVGILVSNHTKATMKFYQKDATTSPNDEDNWQDLIFNLKPGDRVEVIVTFACELRVKNTLVYLVYDEDVCKRIMY 738
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1977g00001 738 PRINTS Disease resistance protein signature 243 258 - -
Pral1977g00001 738 PRINTS Disease resistance protein signature 413 427 - -
Pral1977g00001 738 PRINTS Disease resistance protein signature 320 334 - -
Pral1977g00001 738 Gene3D - 36 206 IPR035897 -
Pral1977g00001 738 Pfam NB-ARC domain 224 457 IPR002182 GO:0043531
Pral1977g00001 738 ProSiteProfiles TIR domain profile. 39 176 IPR000157 GO:0007165
Pral1977g00001 738 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 41 612 IPR044974 GO:0006952
Pral1977g00001 738 Pfam TIR domain 41 205 IPR000157 GO:0007165
Pral1977g00001 738 Gene3D - 207 373 IPR027417 -
Pral1977g00001 738 Gene3D - 379 462 IPR042197 -
Pral1977g00001 738 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 210 473 IPR027417 -
Pral1977g00001 738 SMART till_3 40 182 IPR000157 GO:0007165
Pral1977g00001 738 SUPERFAMILY "Winged helix" DNA-binding domain 449 559 IPR036390 -
Pral1977g00001 738 SUPERFAMILY Toll/Interleukin receptor TIR domain 36 185 IPR035897 -
Pral1977g00001 738 FunFam Disease resistance protein (TIR-NBS-LRR class) 38 210 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1977g00001 Pral-Chr1977 60016 66108 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1977g00001 41 598 WRKY Transcription Factor Family AT4G12020 29.840 8.46e-62 224